| Id Trinity | TRINITY_DN46626_c5_g2_i5 |
|---|---|
| Name Transcript | Ll_transcript_434664 |
| Sequence | CTTTTAGTTTGATGGGTTCCGGGTTCGACTAAGTGGGAGCCTCGTGTACACTGTGCCGCCTTTTTTTAATTTGATGAAACATAAGCTATTTTTTGTTGTT GACATGGTTATAAGTGATTAAAAAAAGGTGTGTTTTTTTAGGGTAGCTTTGCAGTTTGTGCATGACATGCAAGAGAGGGCGCAGAAGAACTTTGATGCGA GTAGAGATAGGTCATTGCCGGTGTTTGGTGTTGGAGTGGTGTTTATTGATGAGAGTGCCATTTTGTCGATTCCTTCTGGTGAAATGGAGGAGGCAGTTGA GGTTATTAGTTCGGTCGTGTCAAGCTTAGCCCCGCCAACGAAAGAGTTGCATATTGTTCCTGTTGAAAATGTTTACTCGTCAGATTCTAGTGATGGAAAG GAGAAGCTTATTAAACTAGTGGGTTCGGTTAGTGATCCAACAGGAAGGGAGGATATGTTGCTTTATTTGCGGATGTTGGCCCTGCAAAAGGTTGCTTCTG AGTTTGGGTATAACAGACTTATTGTAGGATCATGCGTTTCAAGGATTGCTTCCCATGTGATTTCTGCCACTGTGAAGGGTCAAGGATATTCATTACCTGC AGATATACAATATGTTGATGCTAGATGGGAAATTCCCGTTGTGCTTCCTCTGCGTGATTGTTTTGCCCAAGAGATTAACATGTTTTGCCACCTTGACGGT CTAAAGACTTTTCGGTTTTCTACAGTTCCTTGCTCTAGTATCAATAGCTTGGTCTCATCTTTCGTAGCGTTATTGCAGGAAGAAAATCCATCTCGAGAGA GCACCATTGTAAGAACAGCTGGGAAACTTATTCCCTTCCAATTCAATAGGATTCCCGAGATCGTTGATGGTAAGGTTCCATTGGCAACTCGAAGACGCCA AAAGAGATATAATCTCAAACCCAATGATTCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAATAGCCCACTTGACAAGTCTGAAATTGTTGATGCAAGC AATGTTGATAGCAGTAGAAGCAGTGACATTTTTTACAGTGCCTGCTGCTCAAGTTGTCATTTTCAGATACTTCCAAGCGATTCCATATCCATGGAGCAAT TTTATAAGGATTTACCTCAACCAGTGCTTTCCCGAGCAAAGCAAACCAACAATGGCAATTTGAGTCTGCTCAGGGAACAAATCCAAGATTGCTTGCTTTC AGATTGTGAAGATTAATCTTAAATTTAGTTGCCAACATTTAGACTCTTTGAAGAGGGCACAAATTCTGGCTTTGGTGAACTTTTAGCCTCTGGCAAAACT AAGAGCATTACAGTTCACCACTGAGATTCACTACTGGCATTCCTTCAGGACATGGTTGTTGTTGATGATTATCTGGGATAATATTTCAGAGTATATTTGA GTATTAATAATGTGATAGATGACATAATTGAGTTTTTTCATATTCTTGATTCATAAGAATCAGTTTTCAAGCTTTTGATTAATTTAAGTGATTATTTGCA TCCATGTACCTAGTGGAAATGACATTGTACTCTAGATTACATATGTTATGGCAAATGTTGGATCATGAAAGAGGGTTGTCTTAACAAAGTTCCTTTAAGG AATATAAAATAAAGATTCAACATTGGAAGCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_145990; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_434664
| Blastp | Cytoplasmic tRNA 2-thiolation protein 2 from Arabidopsis with 58.17% of identity |
|---|---|
| Blastx | Cytoplasmic tRNA 2-thiolation protein 2 from Arabidopsis with 58.66% of identity |
| Eggnog | Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation (By similarity)(ENOG410YGU3) |
| Kegg | Link to kegg annotations (AT4G35910) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444040.1) |
| Pfam | Cytoplasmic tRNA 2-thiolation protein 2 (PF10288.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |