| Id Trinity | TRINITY_DN46709_c6_g5_i1 |
|---|---|
| Name Transcript | Ll_transcript_316366 |
| Sequence | ATTTTAGCCTTGTTAAAAACGCATCAGTTTTATGCTAAGCAATCTAAGTGTGTGTTTGGTGTTGCTAGTGTGGATTATTTGGGTCATATTTTATCCAAGG AAGGTGTCCGACCAGATCCGGCTAAGATTCAGGCCGTTGTTGACTGGCCGATACCATGTTCGCTCACGACTCTCCGTGGATTTTTGGGTCTCACCGGTTT TTATCGTCGATTCATTCGACAGTACGCCACACACGCCGCTCCTCTCACCGACTTACTTAAACAAGGGAAATTTCTATGGTCTACAGAGGCTCAGTTGGCC TTTACAACAATGAAAAATATAATGATCACTACTCATGTGCTAGCTTTGCCCGATTTCTCTCAGTCTTTCGATGTGGAGACGGATGCTTCTGCCATTGCTA TCGGTGCAGTGCTGTCCCAGGCTGGTCATCCCATTGCTTATTTCAGCAAAAAAATGTCTGGTCGCATGCAAGCTGCTTCCACCTATGTCAGAGAAATGTA TGCGGTTACGGAATCAGTTAAGAAATGGCGGCAATACCTTTTGGGCAGATCGTTTCGCATTTTTACTGATCAGAAAAGTTTGAAACATCTGCTAACTCAG ACCTTTCAAACAACTGAACAACAAAAATGGGCCACTAAATTACAAGGGTTTGAGTTTGAGATTATTTACCGACCCGGGAAGGAGAACAGAGCTGCTGATG CGCTTTCCCGCTGCCATTCCAAAGATGTTACCATCTTGTGTAGCCTATCTTCTCCGGTGCCTGCATTGTTGGACTAGTTGCGCACGTTTTATGACAGTTC AGAAGGTATGGCTATGGTGCAAAATATTTTAGCAAACAAAGCTGATGGTAAGTTTCAATTTTTGGAGTCTTTACTCTATTACCTGGATCGGGTGTTTGTT CCTGACATTCAGGATCTGCGTTGCACCTTGTTGACTGAATATCATGGCACCCCGTCGGCTGGACATTCGGGGTTGAAACCGACTCTCGCTCGGTTGACTG CTTCTTTTTATTGGCCTGGCATGTACAAAGATGCAGTTAAATTTTTGCAACACTGTTTAATATGTCAGCAAAGCAAGTACTTACCAACTGCTAAGCAAGG TTTACTGCAACCGCTGGCTGTTCCTCACCAGGTCTGGGAGGATCTTTCGATGGACTTCATCACCCATCTCCCTATCTCTTGTGGCCACACTGTCATTTGG GTTGTGGTGGATCGTCTTACCTAGTTTGCGTATTTTGTGGCCTTGCCCACTCACTTCACGGCAGCACAGTTGGCATCTCGTTTTTTATCTGAAATTCATC GCTTGCATGGTACACCCCGTTCCATAGTCTCAGATCGTGATCCCGTGTTTATGAGCAGTTTCTGGAAGGAATTTTTTAAACTGCAGGGCACTCGTCTCTG TTTCAGTTCGGCTTACCATCCGGAATCCGATGGCCAGACAGAAGTGGTGAATCGCTGTTTGGAAGGGTATTTGCGTTGTTTCGCTGCTGAGCAAACCCGG GGTTGGTTCCGTTTGTTACATCTTGCGGAGTATTGGTATAACACCAATAAACATTCTGCAACTAGCATGACACCATTCACGGCCTTGTATGGTCGTCCTC CACCCACGGTGCGGGATTATTTTCCAGGGATGGCAGTAATCGTGCCTTTGGATACCCTGTTACAAGAACGCAAACAATTGTTACAGTTGCTCAAACACAA TCTTTTTCGTTCAAAACAGCGTATGAAATCATTTATGGATGCAAAACGTACCGATTGTACCTTCGATGCAGGGTCTTGGGTTTGGCTCCGTTTACATCCT CACCGGCAGCACTCGGTGGTTAGGCGCCCATCCCAGAAGTTGGCTCGTCGTTTCTTTGGTCCATTCCAGATTCTACGCCGCATTGGGAGTGTTGCTTACG AGCTTGCTTTACCTCCGGGAGCACGTGTTCATAATGTGTTTCACGTCTCTTTATTGCGTCGTTACGTGGGTCTAGTACCTCCATTATCCACTTCTCCCTT GCTGACGGACAATGGTGGTGCGGGTGTAGTGGGGGTTGATCCTCTCACGGGTGGCAAGTTTGGGCCAGACGGTGTCTCCTCTCGTTTTGGAGTATCAGAG GAAATGGAGAACACAATAAAGGATGGGCAAAATAATGTCTCTAATGTTCAAGTGTGAGCACTTAACTCGGTTGGAAACCCAAAGAGTTGCTTGCAAGTTA ATGCAACCTCTGCTCCTGGTACAGTGTGTGCAGGCTATCAGCACCGTCCAATTGCTGGGATGTCTGCCACGGCTTCTGCAGTGTCCCAGGATGGCGACAC GAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_146622; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_316366
| Blastp | Retrovirus-related Pol polyprotein from transposon 297 from Sophophora with 40.18% of identity |
|---|---|
| Blastx | Transposon Tf2-11 polyprotein from Schizosaccharomyces with 32.25% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019450597.1) |
| Pfam | N-terminal domain of Peptidase_S41 in eukaryotic IRBP (PF11918.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |