Ll_transcript_316380

• Id Trinity: TRINITY_DN46709_c8_g2_i3
• Name Transcript: Ll_transcript_316380
• Sequence: AAAAAGTCTAAAACAGCGATAGGCAAACGAACCAGAGATAGAAGGAGGTTAGCTGCGGGTCCCACTTTCTCTGTCCTTCATAACCAATAATAACAACCAT TCCCAATTTCCACACACCTTAATTCCCTTGCCGACAACCACTATAATAGACTCATTAATTCCCTACGCCACCACCACACCCACCGCCATGTCGACGGCGG AGGCAGAATTAATAACATACTGGTGCCACGAATGCGATATGAGCGTGGCTCTCACTCGCTCTCAATCTCCTTCACCACTCCTTTGTCCCCATTGCCTCAC ACAATCCCTCGAGCTCATGGATTCTCCTTTCCACCAAAACGACGCCGCTTCACCACTCTCAATCTTCGATTCCCCTTTCCTTCATAGCCTCATTTTCACC ACTAACCCAAACGACGCCGTTTCGGGAAACGACGTTGTCGTTGAAGACCCTCTCTCTTTACTCTACCCAACAACGCTAACACCCTCAAAACCACGCGCTT CAGAAACCGTACCTGTAATCGCTGTAACTTCATCGTTGCTCTTAAATCTTGACCCAAACGGCGTCGTTTTATGCGCTGTGTGTAAAGACGACATCGCCGT CAACGATAACGCGATGACTCTTCCTTGCAACCACTTGTACCATTCCGATTGCATCACGCCGTGGCTTTTAAACCATGACTCGTGCCCGCTGTGTCGGTTT CGGGTGGTGGAGGCGGAGGAGAAGGGAGAAGATGGTGGCGGCGGCGGCGATGGTGAGAGGGCTAGGGAGATCAGAAGGCAGTTGACGGTGGCGATGGCGA GGCTTCTGGAGCTGATGGAGGAAGAGGATGAGGAGGATTTGTATGGATTGAGAACTACTCTGAATCACATTGCTTCTAGGAATGGGATTCTTCACGAGGA TTCTGATGGTTCTGTTGTGAATGAGTCTGTGATTGTTAGTGTTGGTGGTGTTGGTGATGGTGGAGAGGAACAGTTACCGTGATTGTGTTGTTGTGTCTAC AAAATCATCAAGGTATATAGTGTAATAAAAAAATAATGAAGTTGCATCGTCATTCACCATAGATCGTCTTATCAAGTGTAAATCTGCCCGGACGATAATG TCTCTCTCCTTTCTCCCTCCTTTTTTTTGGGAAAACTCCACTAGCTAGATGTAGCACCATAGCCAAAACACAATAAACTGGAGTTCACGAGTATCATACA TTTTTCTTATCAGCTGCCCATTCTCAATTCTCTCTATGTTGGTCCTCCTTGGAAGTGGATTATCTTACCCAGATTCCCTCCATGCTAGGAAGTAAAATCT GTGTATGGTTTTCACCTTTGATTTTTGCTGTGCCTGAATTGCTTGTGGATCCTTTCCACTGAATAATTTTGTTGATAATCTTTTTTATTTACAGCAGATG GTAATATTTCCTGCTAAAAATAATTGTAGTTACTGTATGAAATGAAATTGTGGAGGGATTGAATTGGTAATATTTCCTGCTAAAAATAATTGTAGTTACT GTATGAAATGAAATTGTGGAGGGATTGAATTATCTGGGTGTGGTTGTGTAGGAAGAGCCTTGAAATTTCATATTCTGTGGTGTCTGAATTGCCTTATGGT CTTTCATTTCACTTTATTGTGGTATGAGAATATATAAGAG
• Tissue: pods
• Gene name: LI_gene_146627;
• Additional information: details;

Expression of Ll_transcript_316380

FPKM

• PAB: 15.2
• PNAB: 7.2
• PS1: 12.9
• PS2: 14.8
• PS3: 17
• PW1: 13.8
• PW2: 13.4
• PW3: 11.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_316380

• Blastp: Probable E3 ubiquitin-protein ligase RHC1A from Arabidopsis with 45.21% of identity
• Blastx: Probable E3 ubiquitin-protein ligase RHC1A from Arabidopsis with 46.27% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT2G40830)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456845.1)
• Pfam: zinc-ribbon (PF14369.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;