| Id Trinity | TRINITY_DN46737_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_316420 |
| Sequence | ACATCTAATTCACTTGTTCCTGGTAGCAATAGTTATGTTACGTATCTGATCACGACGAGGACGAATGTTTCCGAATTTGGAGGATCTGAATTTAGTGTTC GGAGGAGGTTTCGTGATGTCGTCACACTTTCGGATCGTTTGGCGGAGTCGTACCGAGGGTTCTTCATTCCGCCGAGGCCGGATAAGAGCATAGTGGAGAG CCAGGTTATGCAGAAGCAGGAGTTCGTGGAGCAGAGGAGGTTGGCGCTGGAGAAGTATCTCCGGAGGCTTGCCACGCATCCGGTGATCAGCAAGAGTGAT GAGTTTAGAGTTTTTCTGCAGGTTCAGGGGAAGCTCCCGCTGCCAGCCACGACTGATGTGGCATCGAGAGTTTTGGATGGCGCAGCGAAGCTCCCGAAGC AGTTGTTGGGGGACAGTGTGATTGCACCCTATGAGGTTGTGCAGCCGGCAAAGGGGGGAATGGATTTGATGAGGCTGTTTAAGGAATTGAAGCAGTCTGT GGTGAATGATTGGGGAGGTTCTAAGCCGGCGGTTGTGGAGGAAGATAAGGAGTTCTTGCAAAAGAAGGAAAGCATTGAAGAGATTGAGCAGAACATCAAT AATGCATCTCAACAGGCCGAATCACTTGTCAAAGCCCAGCAAGATATGGGAGAAACCATGGGTGAATTAGGTTTGGCATTTATTAAGTTGACAAAATTTG AAAATGAGCAGTCTGTCTTGAATTCTCAGAGGGTTAGAGCTGCTGACATGAAAGGTGTAGCAACAGCTGCTGTCAGAGCTAGCAGATTATTTCGAGAACT AAATGCGCAAACTGTGAAGCATTTGGATACACTCCACGAATATCTTGGACTTATGTTGGCTGTCCATGGCGCATTCTCAGACCGCACAAGTGCGCTATTG ACAGTGCAGACCCTTCTATCAGAACTATCTTCTTTGCAGTCACGAGCGGAAAAACTTGAAGCAGCATCTTCTAAAATTTTTGGGGGTGACAAATCTAGGA TCCGTAAATTAGAGGAGCTAAAAGAAACCATAAAAGTCACTGAAGATGCTAAAAATGTTGCAATTAGAGAATATGAGCGGATCAAGGAAAACAATAGGAG TGAAATTGAAAGGCTTGATAGAGAGAGGCAGGATGACTTCTTAAACATGTTGAAAGGATTCGTAGTTAGTCAGGTGGGGCATGCTGAGAAAATAGCAAAT GTCTGGACAAATGTTGTTGAAGAGACCCGTGCATATGTGAATGAAAGCACTTTATCAGTGTCGGCTACAAATTTTTAAATTTTCATCTCCTTTATTCATT GATGTGCCTCAGAATATATTTGTAGTCATGACTCATGACAATAAACTCAAGGAAGCACTTTATCGTTTTCTAAGTTTTCTCACACACCTGTAATCTTCTA ACATTTCTTACACATCATTAAAACTCGTACTTGTAGTCATGACTCATGACAATAAACTCAAGGAAGCACTTTATCGTTTTCTAAGTTTTCTCACACACCT GTAATCTTCTAACATTTCTTACACATCATTAAAACTCGTACTTGTAGTCATGACTCATGACAATAAACTCAAGGAAGCACTTTGTTGGTTTCTAAGTTCT TTCTCACACTTGTACCTCTTCTAACATTTCTTACACATCATTAAAACTCATACTTGATGTTGTAAATTATTTGCTCTATATTCTACTCCAGGTTTTGGAA GATTTGCTTGTTTTTTCCCTTTTCAGATGTCTAACTACTAATCATATACTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_146814; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_316420
| Blastp | Sorting nexin 2B from Arabidopsis with 78.18% of identity |
|---|---|
| Blastx | Sorting nexin 2B from Arabidopsis with 78.18% of identity |
| Eggnog | sorting nexin(COG5391) |
| Kegg | Link to kegg annotations (AT5G07120) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456404.1) |
| Pfam | PX domain (PF00787.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |