Id Trinity | TRINITY_DN46737_c0_g1_i2 |
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Name Transcript | Ll_transcript_316423 |
Sequence | ATCCGAATTCTCTCACATACTAGGTATGCTGTTAATAACAAACTAATATTGATCCAAAGTTCCATACACATAAAAAAATTATTAAAAAATTATGTTATTC TTTTTTGTTTCTCCTGTAACCACCTAACTAACTTCCGAAGAAGGAAAAAAATGATTTGATAGCCTGAATCCCCCAACACGTTACACCGATCTGAGCCCAG TGGTGACAGATCACAGTCCTGCTACTTTCATTTTCAGCTCCGTAACCTCTCCACGTATTCCTCCTCCTCACTCTATGCATTATGTATCATCAACTTCAAC CCTATTCTCCCAGCGCACGTTAGCCCCCATCACTCTCTCCTTCTCTCTCTCTCTACCAAATCCCTAATCTTCTTCTCCCTCTTTAACAATGATGGGCTCT GAAAACCAGAGCTCCGATCAGCAACCACCACCAACCACTCATCAAATTGAAAACCACGATCCTTTAAGCCCTATCAATTCCTACTCCAATTACCGGAGCG TCATTTCCACGCTCTCCGATATCCACCACCCTTTCTCCGACCCCCTCCTCTCTCCTCCTTCCACCCAATCCCCAAACCCTAATGACGACAACAACAGCGA CATTTCCTCTTACGTCGACCTTCCCTCCTACAACGGCGCCGTTTTAACCCTCAACGGCGACTTCGACCTCGACAGCCCCACCGCGTCCTCCGAATCTTCT CAATCTGTCTCCAGATCTCTCTCTTCGAGCGCCGATTACTTAAAGGTAACCGTGTTAGACCCTGTCAAGGAGCAAGAAAGCTCTAATTCGCTTGTTCCTG GTAGCAATAGTTACGCTACGTATCTGATCACGACGAGGACGAATATTCCCGAATTCGGAGGGTCTGAATTTGGTGTCAGGAGAAGGTTTCGTGACGTGGT GACGCTTTCTGATCGGTTGGCGGAGTCGTACCGAGGGTTCTTCATTCCGCCGAGGCCGGATAAGAGCGTAGTGGAGAGCCAGGTGATGCAGAAGCAGGAT TTCGTGGAGCAGAGGAGGGTGGCATTGGAGAAGTATCTGAGGAGGCTCGCTGCGCATCCTGTGATTAAGAAGAGTGACGAGTTTAGGGTTTTTCTGCAGG CTCAGGGGAAGTTACCGTTGCCAACTACTATCGATGTGGCTTCGAGAGTTATGAATGGCGCGGCAAAGCTTCCAAAGCAGTTTCTAGGGGACAGTGTTAT TACTCCCCATGAGGTTGTGCAGCCTGCGAAAGGGGGAAGGGATTTGATGAGGCTGTTTAAGGAGTTGAAACAGTCTATGGTGAATGATTGGGGCGGGTCT AAGCCGACGGTTGTGGAGGAAGACAAGGAGTTCTCGGAAAGGAAGGAAAGCATTCAAGAGCTTGAGCAGCACATCACTAATGCATCTCAGCAGGCAGAAT CACTTGTGAAAGCTCAGCAGGCTATGGGAGAAACCATGGGTGAATTAGGATTGGCATTTATTAAATTGACAAAATTTGAGAATGAGCAGGCTGTCTGGAA CTCTCAGAGGGTTAGAGCTGCTGACATGAAAGGTGTAGCAACAGCTGCTGTCAGAGCTAGCAGATTATTTCGAGGACTAAATGCAGAGACTGTGAAGCAT TTGGATACACTTCACGAATATCTCGGACTAATGTTGGCTGTCCATGGTGCATTCTCGGATCGCTCAAGTGCGCTATTGACAGTGCAAACCCTTCTATCAG AACTATCTTCTCTGCAGTTAAGAGCTGAAAAACTTGAAGCAGCATCTTCTAAAGTTTTTGGGGCTGACAAATCAAGGATTCGTAAATTAGAGGAGCTAAA AGAAACCATAAAAGTCACTGAAGATGCTAAAAATGTTGCAATTAGAGAATATGAGCGGATCAAGGAAAACAATAGGAGTGAAATTGAAAGGCTTGATAGA GAGAGGCAGGATGACTTCTTAAACATGTTGAAAGGATTCGTAGTTAGTCAGGTTTGATTTTTGTCTATGACTCTATTCTTTTTAATTGTCTTCTTTAGTA GTCGACTGATCTGTATTTTCCTTTGATAGTCTCCACTCCCCATATGTAAACACTTTCTATTCTATGCATAATCTCTAATGAGTGAGGTTAATCCAGAAGT AGCTCTGCTGGTGTTAGTGTGAGCCATGGTTGTTTGACCAAGAAAATTGCAATTATAGTAGAGAGGACTTTATGTTTACAATGTCAGGGACACATGATGA ATGAGAAAATAAGAATGAGTAGTCATCTTATTAGAACTAGAATTTTCACTGAGGCCATGAAAAAATGGGACATTCTCATTTGTATCAAGCAAAACTTCTG GAGTAATTACCACCAATACATAAAAGCTGGAGTAGAGATAGTTGTATGGTATAGACTGAGAGTCATGAAACAAAATGATGAACTGAATACATTTTTAATG AGAAAATAGTTGAGGTTTTACTTGTGAAGGAAACATGTGTTCTAACTGCTAAAGTATCATTCCATCGAGTAAAAAAAACTGCTAAAGTATCATTATTGCA AAGGGATTAGACAATGTGTCATATTGTCCTATTCCTCTTTAGATAATGAGCAGAATAGCCTCCTTTCACATTACAGTCAATAACTATTCCTCTTGCAAAT CTGACATGTTGATTTCTGTAAGATTTTTGCAACCGTAGTCATATATGGTGTATGGTGAAGTTTTTCTTTCTTCCAAATGGGAAAAAGAAATACAGTCATG TGCGCAGTGCATGCAGCATTGACAATTCTTTCATTATTACACATATATGCCCCGAGAAAGGAAGTTGATTGTAACTTTTGAAGGTAAAATGGTTACTAGG TGTAATTAAGCTGAACCCCAAGGGAAGTTAATGTGATTTTCCCTAACATTACTGAGAATGGAAAAGCTGCCTATTTCAGTAATCTTTGGTTAATTTTGCT CCTCATCTGCACGTTTTGTTGATGCTATCTTTAGTTGCATTCATCATTTGCTTTGTGCCCAAGTAAGTAATACTCGTTGTGAATTAATAGGTGGGGCATG CTGAGAAAATAGCAAATGTCTGGACAAATGTTGTTGAAGAGACCCGTGCATATGTGAATGAAAGCACTTTATCAGTGTCGGCTACAAATTTTTAAATTTT CATCTCCTTTATTCATTGATGTGCCTCAGAATATATTTGTAGTCATGACTCATGACAATAAACTCAAGGAAGCACTTTATCGTTTTCTAAGTTTTCTCAC ACACCTGTAATCTTCTAACATTTCTTACACATCATTAAAACTCGTACTTGTAGTCATGACTCATGACAATAAACTCAAGGAAGCACTTTATCGTTTTCTA AGTTTTCTCACACACCTGTAATCTTCTAACATTTCTTACACATCATTAAAACTCGTACTTGTAGTCATGACTCATGACAATAAACTCAAGGAAGCACTTT GTTGGTTTCTAAGTTCTTTCTCACACTTGTACCTCTTCTAACATTTCTTACACATCATTAAAACTCATACTTGATGTTGTAAATTATTTGCTCTATATTC TACTCCAGGTTTTGGAAGATTTGCTTGTTTTTTCCCTTTTCAGATGTCTAACTACTAATCATATACTT BLAST |
Tissue | pods |
Gene name | LI_gene_146814; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_316423
Blastp | Sorting nexin 2B from Arabidopsis with 65.09% of identity |
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Blastx | Sorting nexin 2B from Arabidopsis with 63.88% of identity |
Eggnog | sorting nexin(COG5391) |
Kegg | Link to kegg annotations (AT5G07120) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019461500.1) |
Pfam | PX domain (PF00787.23) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |