| Id Trinity | TRINITY_DN46777_c0_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_315097 |
| Sequence | ATTTGATCTAGGGGCATCACAGAAACGTAACACAATTAAAAAAACAAGACTAGTCATTTAACAAAGAGGATAAGGTGTATGATTTATTTAGCATATTCCA TTGACATGCCTTGTAAGTTCAATATAATTCCACTATAAGTATATCACCTTTGTGCCTATAAGTACATCATTTTATATCATCATCATTGCATTATTCCCCT TTGCTTTTGAACTGCCAAAATCTCTTTTTTTTAAGACTTCGATAGAAAAAAGTGAGAGAAAGAGAGGAAGAAAACATAAAAGATGAAACCCAACTTTGCC TTATTGTCCAAGCTTTTGATACTCCAATACCTATCAGCTCTATGTCTTTCTCAAGATTTTGATTTCTTCTACTTTGTTCAGCAGTGGCCAGGAGCATACT GTGACACAAAGCAGAGTTGCTGTTATCCTAAGACTGGAAAACCTGTAGCTGATTTTGGTATTCATGGACTCTGGCCTAACTACAATGATGGTTCATGGCC CTCAAACTGTGATCCTGACAGTGTCTTTGACAAATCTCAGGTACTTAATATTTCAAGAATAACTCGAATCGAATAGATAATCCATGTAGTAACCCCGCAG TGAGATAAAGACTTAACTGTGTTATTGTTGATTGAAATCAAACACATAACTTACTTTTAAAATGAGCATTAATATATATAAGGGGACAAAGTAAAGATAT ATTCATTTACCAAAAAACAGTAGGATGTACTCACCTTTAATTAAATTATATCTAGATCTCAACATATTATTGATTTGATGATGAATACACTCTTGTTTCT CTTTATAAAGAAGCTGAGTTTAGATTAGTATTTTTCATTTTTCACGTAACAATGTAATGATTGAAGATGAATGTGATGAGTTGAGATGCCTTGAGGAGTA GCTGTATCATCGCTCACTTTTAATATAAATAATACAAATAAATAATATATAGATTATATATAAATATTTGATATTATACCGTTGGTTTTTTTTTTTACTT CTTATTATTGATGTGTTTCTCCATGCCTTGAGAATTGAGATACATTTAGTTTTCTTAATCATCTCAAATTCATTATATATTAAGGAAGATATATTCAATT TCACCAATCTAATTCATGAAAATTATTATATCTCTATCAACTTTGTATATATAGTATAAATTAACAAAACTAACCATTGTACTTAAATTTCATATATCTA ATGAAATTCTCATAGATGAGTCATATTTAATATAGATCTCAGAACTCATAAGCAGCATGAATGAGAAGTGGCCATCCCTAAGTTGCCCAAGCAGCAATGG CTTTAGATTCTGGTCACATGAATGGGAAAAACATGGTACCTGCGCAGAATCTGAGCTTGATCAGCGTGAATACTTTGAAACAGCTCTCAAATTAAAGGAG CAAATCAACCTTCTTCAAATTCTCAAGGATGCAGGGATTGAACCAGATGATGAATTTTACACCCTAGACAACATTTCAAATGCTATTAAAAAAGGTACTG GGTTTACACCAGGAATTGATTGTAATAAGGATTCAGCCCATAACACCCAACTTTACCAAGTTTACTTCTGTGTGGACACTTCTGGCTCAAATCTCATTGA GTGCCCTATTCTTCCGAGGAGCAAATGTGGTTCAAATATCCAATTCCCCAAGTTTTAAACAGAGTTTAACTGAGAAAATCATTTTTATGTTATTGTTTTC TTGTCATTGTTTCTTACATTTCACATGGTGACTATTCAGCCACTTTCCTTTGTATGTGCCTTCTACCAATAAAAGTTTATGGGATTTCATTGCAACAGAT TGGCAACAAAAAAACAAAGAGGAATTAGTAATGTTATTTAAATTAAAAAATAGTTAAGATAAGAATATGTTTACACTATCAATCATCTTTCAGTATTTTT GTGGACACGTGAAAAACAATTAGGATATAACTTCATTTTTTTTCTTTTCAAAATGAAATTAAAGTATTGAAGAATGTCACTAACTTGAGCTTGAAGGTTC CTCATGGTCTACATGCTGCTGCTACTGCTGCTACCAAATTCACATCACATAAGTGTTGTGCTGGCGCCAAGGCACATCCTGGTGCGCCTGTGTGCTGCGC CAAGGCACGTCCTGGTGCGCCTGTGTGCTGCGCCAAGGGACGTGCTGTGTGCTGCGCCACGGCACATCCTGGTGCGCATGTGTGCTGCGCCAAGGATGCC CATGCTGAGGCCATGGCGCATGAGTTCCCTGCTAGTGCCAAGGCCAAGGGCCATGGCCTGTCCTGGCCTGTCAGGGACACTGGCCAAGGGCTGTTTGGCA CTGATGTGGCCCATGCCATTTTTTAACAGTTTCTGTTATTATTAGTTATAGCCGTTATTTTGGCGCCAAAACTTTCCAAACTTTTTGTATAAATTCTTTG GCTTGTTGATCAAGCAATTGTGAAATAAAGTAGATAAATTCTTTTTCTTCCAAATTGCAATATGGTATCAAGAGCTTAACTCCGCTGCAACATCTTTCAA AACCAAAATCTATCATCTTCTTCCATCCAAATGGCAATGGCAGATGAACAAGGTCAAGAATCTGACCTACACATTATCACCAACTCATACGATACACAAA GCCCATACTATATGCACCCTGGAGAAAACCCAGGCTCTGTCCTTGTCTCACCACCACTAACTGGAAGCAACTACCATTCTTGGTGCAAATCAATGAGACG AGCACTAGGTTCCAAGAACAAGATCAGATTCATAGATGGCTCACTCACACCAGGAGATCCTACAGAAGTCAATTTTGAGATATGGCACAGATGCAATGAC ATGGTAATCAGTTGGATTACAAAGTGCCTATCACCTGAAATCTCTCAAAGTGTGGTATACATAGATAGTGCACAAGAATTGTGGGAAGACTTGAAAGAAA GGTTTTCAAAGGGAGACTACTTTCGGTTTTCAGATCTTCTCAAAGAAATCCACTCAATAAAACAAGGAGACAAGGGAGTTTCAAAATATTTCACTGAATT GAAAACATTATGGGATGATCTTGAGTCACTAAGGGTCATGCCATCTTGCCTATGCCCAATCAGATGCAGATGTGGGATGATTGACAAAATGAGGGAACAA CGCGATATAGAGTATACCATCTGTTTCCTCAAAGGACTAAATGATGATTTTGGCACATCAAGAGCACAAATCCTATTAATGGAACCACTGCCAAAAATAA GGAAAGCTTTTGCCTTGCTTGTTCAGCAAGAAAGGCAATTGCTTGGAGATAATGAGGTGAACTCCAATGTTCTGTTTAATGCCATCAACAAAGAGACAAC TCAAGCTGATCCAACTCAACAATGGAGATCAAGATCAAGTCTTATTAAAGGAAACAGCAATGCACCAAGAGGGAAAAGCACCAACAGAACTTTCACCAAC ACAAAGCCTATCAATATCAAGATCTGCTCATTCTGTGGTAGAGAGAGGCACACAGTGGAAACATGCTATTTTAAGCATGGTTTTCCACCAAACATGAACC AGAGTAAGGCAAGACAAATAATTGGCTCAGTCAACAGTGCAACAACAAACAAAGGCAAAGAGCACAATGATGCTGATGATACTTCTGAGAATGCCACAAT GAGTTTTAGTCTTGGAGCCAAGGAGTATGCCCAATTAGCATCACTATTTCAAAACATTGGAATAACAGCTCCTAATCACAGTGTCAACCAACTCAGCATC AAGCCTGGGCAAACCTTTGGAGACAGCAAAGACTCAGAAAATCAAGATCAAGGAACAACAGGTAAAACTTTCTGGATTTTGGACTCAGGGGCAACTGACC ATGTTTGCCCCCAACTCAGTAAATTTGACACCTTTCAAAGCATAAAACCTGTCACAATTAACTTGCCAAATGGAACCACTACCTTGGCAAAGATCAGTGG CAACATTGTCTTAAATAAGCTTTTACATTTGCATAATGTCTTATATGTGCCCAATTTTGAATATAATCTCATTTCTGTGCACAAACTCACAAAATCAATG CACTGCAACCTAACCTTTGATGCTATGAAATGTTCTATTCAGGATATGAATACCTTGAGGATGATTGGGCATGCTGAGATTAAAAATAGTCTATATGTTC TAGAGGATTCTGTTGATAATATTTCTGCTAGAAAACACATTGTAAATGCCATGTGCACTTATGACTCTTTTGACTTGTGGCACTATAGGTTAGGCCATCC ATCTCATGATGTATTGAAATCTGTTTGTAAGAACTATGCTGATGTAAAATTTGATGAAAATAAAGTTGCTTGTGAATTTTGCCACTTAGGAAAACAAACC AAACTTCCTTTTCCTAGTAATAAAAACAGAAGTATGTACATCTTTGACATTGTCCACTTGGACATATGGGGGCCCTTGGGAATTTCTTCCATACATGGTC ATAGATACTTTCTTACTGTCATGGATGATCACTCAAGGTATACATGGCTGTTCCTAATGAAATCTAAAGCAGAGGCAAGAGGCCTAATGCAAAACTTTAT TACTATGATCAAAACTCAGTTTGGCAAACAAGTTAAACAAGTAAGAACAGACAATGGGACAGAATTCAACATTCCCAAGTACTTTAGTGAGCATGGCATG ATACATCAAACTTCATGTGTTGAAACTCCACAACAGAATTCTGTTGTGGAGAGAAAGCATAGACACATATTGAATGTGACTAGAACTCTTATGTTTCAGT CTAGACTTCCTAGAACCTTTTGGGGGTATGCTGTCCAACATGCCACATACATAATAAATAGACTACCTAGTCACACATTAGACCACAAGACTCCTTTTGA GCTTCTGCATAATCAAACACCTAACCTGCTAGATATCAAGGTCTTTGGATGTCTATGTTTTGCCTCAACTTTGACACATCTTAGGACCAAGCTTGAGCCT AGGGCAAGAAAGTGTGTTTTTCTTGGCTACAAAAGAGGTACAAAAGGTTATGTTGTCCTTGATATTAACAACAGGGAAATATTCCTGTCTAGACATGTCA TCTTCTATGAGCATATTTTTGCTTATGGAAATTTAGAAGATAAGGATCAAATCACTTCATCTAATCCCACTGTCAGCTCTGATTTTATGGACAATTGTGA TCCTGTTAGCAATAGTCATGGATTAGATGTTCCTAGGTCTTCTAGCACTAGTGTCCCAAGCACTACTACTACCCCTGAGCAGCCTGCAAACCTAGACAAC TTTGACCCTAACCATACAGAGTCTGATCAAAATGACCTTAGAAGGTCAAGTAGAATTAGGGGTCCACCAACTTATTTGAAGGATTTTCATTGCAATTCTT TTAGGGTTGATGAAACCAAGGTGACACACCCCTTATCTGCTGTTCTATCTTATAGTTCCTTACTTCCTGCACACCTCAGTCACACTTTGGCCATATCAAC ACATGATGAGCCAAAACATTATAACCAAGCCATCACCTCACAGTATTGGATAGAGGCTATGCAAAATGAACTCAATGCCTTAGAGCTAAATAAGACTTGG ACCTTAGTTGACTTACCTAGTGATAAGAGGGCCATAGGTTGTAAGTGGGTGTATAAGATCAAATATAAGTCAGATGGAACTATAGAAAGATATAAAGCTA GACTTGTAGCAAAGGGGTACAATCAAATAGAAGGCTTAGACTACTTTGATACTTTTGCCCCTGTTGTGAAATTAACAACAGTAAGGCTTCTTCTTGCCAT AGCTTCTTCACAAAACTGGTTCATTCATCAATTAGATGTCAATAATGCCTTTTTGCATGGAGATCTTGATGAGGAAGTTTACATGACAATTCCTCAAGGG GTTGTCTGTGGTGAAGCAAACAAGGTTTGTAAGCTGCATAAGTCCCTTTATGGTCTTAAGCAGGCAGGAAGACAATGGTTTACTAAGTTGTCTCAGTACC TTGTTTCACTAGGCTATGTGCAGTCTCATCATGATCATTCCTTGTTTACCAAGAAATCCAAGAATCTGTTTACTTCACTGCTCATATATGTAGATGATTT GTTGTTGGCAGGGAATGACAAAGCTGAAATTGATCATGTAAAGAATTGTCTTCATGATCAATTCAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_147103; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_315097
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.87% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.96% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019450585.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14244.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |