| Id Trinity | TRINITY_DN46777_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_315068 |
| Sequence | ATTTGATCTAGGGGCATCACAGAAACGTAACACAATTAAAAAAACAAGACTAGTCATTTAACAAAGAGGATAAGGTGTATGATTTATTTAGCATATTCCA TTGACATGCCTTGTAAGTTCAATATAATTCCACTATAAGTATATCACCTTTGTGCCTATAAGTACATCATTTTATATCATCATCATTGCATTATTCCCCT TTGCTTTTGAACTGCCAAAATCTCTTTTTTTTAAGACTTCGATAGAAAAAAGTGAGAGAAAGAGAGGAAGAAAACATAAAAGATGAAACCCAACTTTGCC TTATTGTCCAAGCTTTTGATACTCCAATACCTATCAGCTCTATGTCTTTCTCAAGATTTTGATTTCTTCTACTTTGTTCAGCAGTGGCCAGGAGCATACT GTGACACAAAGCAGAGTTGCTGTTATCCTAAGACTGGAAAACCTGTAGCTGATTTTGGTATTCATGGACTCTGGCCTAACTACAATGATGGTTCATGGCC CTCAAACTGTGATCCTGACAGTGTCTTTGACAAATCTCAGGTACTTAATATTTCAAGAATAACTCGAATCGAATAGATAATCCATGTAGTAACCCCGCAG TGAGATAAAGACTTAACTGTGTTATTGTTGATTGAAATCAAACACATAACTTACTTTTAAAATGAGCATTAATATATATAAGGGGACAAAGTAAAGATAT ATTCATTTACCAAAAAACAGTAGGATGTACTCACCTTTAATTAAATTATATCTAGATCTCAACATATTATTGATTTGATGATGAATACACTCTTGTTTCT CTTTATAAAGAAGCTGAGTTTAGATTAGTATTTTTCATTTTTCACGTAACAATGTAATGATTGAAGATGAATGTGATGAGTTGAGATGCCTTGAGGAGTA GCTGTATCATCGCTCACTTTTAATATAAATAATACAAATAAATAATATATAGATTATATATAAATATTTGATATTATACCGTTGGTTTTTTTTTTTACTT CTTATTATTGATGTGTTTCTCCATGCCTTGAGAATTGAGATACATTTAGTTTTCTTAATCATCTCAAATTCATTATATATTAAGGAAGATATATTCAATT TCACCAATCTAATTCATGAAAATTATTATATCTCTATCAACTTTGTATATATAGTATAAATTAACAAAACTAACCATTGTACTTAAATTTCATATATCTA ATGAAATTCTCTAGATGAGTCATATTTAATATAGATCTCAGAACTCATAAGCAGCATGAATGAGAAGTGGCCATCCCTAAGTTGCCCAAGCAGCAATGGC TTTAGATTCTGGTCACATGAATGGGAAAAACATGGTACCTGCGCAGAATCTGAGCTTGATCAGCGTGAATACTTTGAAACAGCTGTGACATTAAAGGAGG AAATGAACCTTCTTCAGATTCTCCAGGATGCAGGGATTGAACCAGATGATGAATTTTACACCCTAGACAACATTTCAAATGCTATTAAAAAAGGTACTGG GTTTACACCAGGAATTGATTGTAATAAGGATTCAGCCCATAACACCCAACTTTACCAAGTTTACTTCTGTGTGGACACTTCTGGCTCAAATCTCATTGAG TGCCCTATTCTTCCGAGGAGCAAATGTGGTTCAAATATCCAATTCCCCAAGTTTTAAACAGAGTTTAACTGAGAAAATCATTTTTATGTTATTGTTTTCT TGTCATTGTTTCTTACATTTCACATGGTGACTATTCAGCCACTTTCCTTTGTATGTGCCTTCTACCAATAAAAGTTTATGGGATTTCATTGCAACAGATT GGCAACAAAAAAACAAAGAGGAATTAGTAATGTTATTTAAATTAAAAAATAGTTAAGATAAGAATATGTTTACACTATCAATCATCTTTCAGTATTTTTG TGGACACGTGAAAAACAATTAGGATATAACTTCATTTTTTTTCTTTTCAAAATGAAATTAAAGTATTGAAGAATGTCACTAACTTGAGCTTGAAGGTTCC TCATGGTCTACATGCTGCTGCTACTGCTGCTACCAAATTCACATCACATAAGTGTTGTGCTGGCGCCAAGGCACATCCTGGTGCGCCTGTGTGCTGCGCC AAGGCACGTCCTGGTGCGCCTGTGTGCTGCGCCAAGGGACGTGCTGTGTGCTGCGCCACGGCACATCCTGGTGCGCATGTGTGCTGCGCCAAGGATGCCC ATGCTGAGGCCATGGCGCATGAGTTCCCTGCTAGTGCCAAGGCCAAGGGCCATGGCCTGTCCTGGCCTGTCAGGGACACTGGCCAAGGGCTGTTTGGCAC TGATGTGGCCCATGCCATTTTTTAACAGTTTCTGTTATTATTAGTTATAGCCGTTATTTTGGCGCCAAAACTTTCCAAACTTTTTGTATAAATTCTTTGG CTTGTTGATCAAGCAATTGTGAAATAAAGTAGATAAATTCTTTTTCTTCCAAATTGCAATATGGTATCAAGAGCTTAACTCCGCTGCAACATCTTTCAAA ACCAAAATCTATCATCTTCTTCCATCCAAATGGCAATGGCAGATGAACAAGGTCAAGAATCTGACCTACACATTATCACCAACTCATACGATACACAAAG CCCATACTATATGCACCCTGGAGAAAACCCAGGCTCTGTCCTTGTCTCACCACCACTAACTGGAAGCAACTACCATTCTTGGTGCAAATCAATGAGACGA GCACTAGGTTCCAAGAACAAGATCAGATTCATAGATGGCTCACTCACACCAGGAGATCCTACAGAAGTCAATTTTGAGATATGGCACAGATGCAATGACA TGGTAATCAGTTGGATTACAAAGTGCCTATCACCTGAAATCTCTCAAAGTGTGGTATACATAGATAGTGCACAAGAATTGTGGGAAGACTTGAAAGAAAG GTTTTCAAAGGGAGACTACTTTCGGTTTTCAGATCTTCTCAAAGAAATCCACTCAATAAAACAAGGAGACAAGGGAGTTTCAAAATATTTCACTGAATTG AAAACATTATGGGATGATCTTGAGTCACTAAGGGTCATGCCATCTTGCCTATGCCCAATCAGATGCAGATGTGGGATGATTGACAAAATGAGGGAACAAC GCGATATAGAGTATACCATCTGTTTCCTCAAAGGACTAAATGATGATTTTGGCACATCAAGAGCACAAATCCTATTAATGGAACCACTGCCAAAAATAAG GAAAGCTTTTGCCTTGCTTGTTCAGCAAGAAAGGCAATTGCTTGGAGATAATGAGGTGAACTCCAATGTTCTGTTTAATGCCATCAACAAAGAGACAACT CAAGCTGATCCAACTCAACAATGGAGATCAAGATCAAGTCTTATTAAAGGAAACAGCAATGCACCAAGAGGGAAAAGCACCAACAGAACTTTCACCAACA CAAAGCCTATCAATATCAAGATCTGCTCATTCTGTGGTAGAGAGAGGCACACAGTGGAAACATGCTATTTTAAGCATGGTTTTCCACCAAACATGAACCA GAGTAAGGCAAGACAAATAATTGGCTCAGTCAACAGTGCAACAACAAACAAAGGCAAAGAGCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_147103; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_315068
| Blastp | - |
|---|---|
| Blastx | Ribonuclease 3 from Arabidopsis with 60.9% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019450659.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14244.5) |
| Rfam | - |
| GO | - |