| Id Trinity | TRINITY_DN46777_c0_g1_i7 |
|---|---|
| Name Transcript | Ll_transcript_315075 |
| Sequence | CACTATCCAACAACACAGTTCAGGAAGAAAAGAAAAAGAGGGGCAAAAAAATGGAGTTCAAAGGATGCAATTTGATTAAGCTTCTGCTGCTAACACAGTG CCTCATAGTTCTCTGTGCTTATGGTGAGGATGTTCATTTCTTCTACTTTGTTCAGCAGTGGCCAGGAGCATACTGTGACACAAAGCAGAGTTGCTGTTAT CCTAAGACTGGAAAACCTGTAGCTGATTTTGGTATTCATGGACTCTGGCCTAACTACAATGATGGTTCATGGCCCTCAAACTGTGATCCTGACAGTGTCT TTGACAAATCTCAGGTACTTAATATTTCAAGAATAACTCGAATCGAATAGATAATCCATGTAGTAACCCCGCAGTGAGATAAAGACTTAACTGTGTTATT GTTGATTGAAATCAAACACATAACTTACTTTTAAAATGAGCATTAATATATATAAGGGGACAAAGTAAAGATATATTCATTTACCAAAAAACAGTAGGAT GTACTCACCTTTAATTAAATTATATCTAGATCTCAACATATTATTGATTTGATGATGAATACACTCTTGTTTCTCTTTATAAAGAAGCTGAGTTTAGATT AGTATTTTTCATTTTTCACGTAACAATGTAATGATTGAAGATGAATGTGATGAGTTGAGATGCCTTGAGGAGTAGCTGTATCATCGCTCACTTTTAATAT AAATAATACAAATAAATAATATATAGATTATATATAAATATTTGATATTATACCGTTGGTTTTTTTTTTTACTTCTTATTATTGATGTGTTTCTCCATGC CTTGAGAATTGAGATACATTTAGTTTTCTTAATCATCTCAAATTCATTATATATTAAGGAAGATATATTCAATTTCACCAATCTAATTCATGAAAATTAT TATATCTCTATCAACTTTGTATATATAGTATAAATTAACAAAACTAACCATTGTACTTAAATTTCATATATCTAATGAAATTCTCATAGATGAGTCATAT TTAATATAGATCTCAGAACTCATAAGCAGCATGAATGAGAAGTGGCCATCCCTAAGTTGCCCAAGCAGCAATGGCTTTAGATTCTGGTCACATGAATGGG AAAAACATGGTACCTGCGCAGAATCTGAGCTTGATCAGCGTGAATACTTTGAAACAGCTCTCAAATTAAAGGAGCAAATCAACCTTCTTCAAATTCTCAA GGATGCAGGGATTGAACCAGATGATGAATTTTACACCCTAGACAACATTTCAAATGCTATTAAAAAAGGTACTGGGTTTACACCAGGAATTGATTGTAAT AAGGATTCAGCCCATAACACCCAACTTTACCAAGTTTACTTCTGTGTGGACACTTCTGGCTCAAATCTCATTGAGTGCCCTATTCTTCCGAGGAGCAAAT GTGGTTCAAATATCCAATTCCCCAAGTTTTAAACAGAGTTTAACTGAGAAAATCATTTTTATGTTATTGTTTTCTTGTCATTGTTTCTTACATTTCACAT GGTGACTATTCAGCCACTTTCCTTTGTATGTGCCTTCTACCAATAAAAGTTTATGGGATTTCATTGCAACAGATTGGCAACAAAAAAACAAAGAGGAATT AGTAATGTTATTTAAATTAAAAAATAGTTAAGATAAGAATATGTTTACACTATCAATCATCTTTCAGTATTTTTGTGGACACGTGAAAAACAATTAGGAT ATAACTTCATTTTTTTTCTTTTCAAAATGAAATTAAAGTATTGAAGAATGTCACTAACTTGAGCTTGAAGGTTCCTCATGGTCTACATGCTGCTGCTACT GCTGCTACCAAATTCACATCACATAAGTGTTGTGCTGGCGCCAAGGCACATCCTGGTGCGCCTGTGTGCTGCGCCAAGGCACGTCCTGGTGCGCCTGTGT GCTGCGCCAAGGGACGTGCTGTGTGCTGCGCCACGGCACATCCTGGTGCGCATGTGTGCTGCGCCAAGGATGCCCATGCTGAGGCCATGGCGCATGAGTT CCCTGCTAGTGCCAAGGCCAAGGGCCATGGCCTGTCCTGGCCTGTCAGGGACACTGGCCAAGGGCTGTTTGGCACTGATGTGGCCCATGCCATTTTTTAA CAGTTTCTGTTATTATTAGTTATAGCCGTTATTTTGGCGCCAAAACTTTCCAAACTTTTTGTATAAATTCTTTGGCTTGTTGATCAAGCAATTGTGAAAT AAAGTAGATAAATTCTTTTTCTTCCAAATTGCAATATGGTATCAAGAGCTTAACTCCGCTGCAACATCTTTCAAAACCAAAATCTATCATCTTCTTCCAT CCAAATGGCAATGGCAGATGAACAAGGTCAAGAATCTGACCTACACATTATCACCAACTCATACGATACACAAAGCCCATACTATATGCACCCTGGAGAA AACCCAGGCTCTGTCCTTGTCTCACCACCACTAACTGGAAGCAACTACCATTCTTGGTGCAAATCAATGAGACGAGCACTAGGTTCCAAGAACAAGATCA GATTCATAGATGGCTCACTCACACCAGGAGATCCTACAGAAGTCAATTTTGAGATATGGCACAGATGCAATGACATGGTAATCAGTTGGATTACAAAGTG CCTATCACCTGAAATCTCTCAAAGTGTGGTATACATAGATAGTGCACAAGAATTGTGGGAAGACTTGAAAGAAAGGTTTTCAAAGGGAGACTACTTTCGG TTTTCAGATCTTCTCAAAGAAATCCACTCAATAAAACAAGGAGACAAGGGAGTTTCAAAATATTTCACTGAATTGAAAACATTATGGGATGATCTTGAGT CACTAAGGGTCATGCCATCTTGCCTATGCCCAATCAGATGCAGATGTGGGATGATTGACAAAATGAGGGAACAACGCGATATAGAGTATACCATCTGTTT CCTCAAAGGACTAAATGATGATTTTGGCACATCAAGAGCACAAATCCTATTAATGGAACCACTGCCAAAAATAAGGAAAGCTTTTGCCTTGCTTGTTCAG CAAGAAAGGCAATTGCTTGGAGATAATGAGGTGAACTCCAATGTTCTGTTTAATGCCATCAACAAAGAGACAACTCAAGCTGATCCAACTCAACAATGGA GATCAAGATCAAGTCTTATTAAAGGAAACAGCAATGCACCAAGAGGGAAAAGCACCAACAGAACTTTCACCAACACAAAGCCTATCAATATCAAGATCTG CTCATTCTGTGGTAGAGAGAGGCACACAGTGGAAACATGCTATTTTAAGCATGGTTTTCCACCAAACATGAACCAGAGTAAGGCAAGACAAATAATTGGC TCAGTCAACAGTGCAACAACAAACAAAGGCAAAGAGCACAATGATGCTGATGATACTTCTGAGAATGCCACAATGAGTTTTAGTCTTGGAGCCAAGGAGT ATGCCCAATTAGCATCACTATTTCAAAACATTGGAATAACAGCTCCTAATCACAGTGTCAACCAACTCAGCATCAAGCCTGGGCAAACCTTTGGAGACAG CAAAGACTCAGAAAATCAAGATCAAGGAACAACAGGTAAAACTTTCTGGATTTTGGACTCAGGGGCAACTGACCATGTTTGCCCCCAACTCAGTAAATTT GACACCTTTCAAAGCATAAAACCTGTCACAATTAACTTGCCAAATGGAACCACTACCTTGGCAAAGATCAGTGGCAACATTGTCTTAAATAAGCTTTTAC ATTTGCATAATGTCTTATATGTGCCCAATTTTGAATATAATCTCATTTCTGTGCACAAACTCACAAAATCAATGCACTGCAACCTAACCTTTGATGCTAT GAAATGTTCTATTCAGGATATGAATACCTTGAGGATGATTGGGCATGCTGAGATTAAAAATAGTCTATATGTTCTAGAGGATTCTGTTGATAATATTTCT GCTAGAAAACACATTGTAAATGCCATGTGCACTTATGACTCTTTTGACTTGTGGCACTATAGGTTAGGCCATCCATCTCATGATGTATTGAAATCTGTTT GTAAGAACTATGCTGATGTAAAATTTGATGAAAATAAAGTTGCTTGTGAATTTTGCCACTTAGGAAAACAAACCAAACTTCCTTTTCCTAGTAATAAAAA CAGAAGTATGTACATCTTTGACATTGTCCACTTGGACATATGGGGGCCCTTGGGAATTTCTTCCATACATGGTCATAGATACTTTCTTACTGTCATGGAT GATCACTCAAGGTATACATGGCTGTTCCTAATGAAATCTAAAGCAGAGGCAAGAGGCCTAATGCAAAACTTTATTACTATGATCAAAACTCAGTTTGGCA AACAAGTTAAACAAGTAAGAACAGACAATGGGACAGAATTCAACATTCCCAAGTACTTTAGTGAGCATGGCATGATACATCAAACTTCATGTGTTGAAAC TCCACAACAGAATTCTGTTGTGGAGAGAAAGCATAGACACATATTGAATGTGACTAGAACTCTTATGTTTCAGTCTAGACTTCCTAGAACCTTTTGGGGG TATGCTGTCCAACATGCCACATACATAATAAATAGACTACCTAGTCACACATTAGACCACAAGACTCCTTTTGAGCTTCTGCATAATCAAACACCTAACC TGCTAGATATCAAGGTCTTTGGATGTCTATGTTTTGCCTCAACTTTGACACATCTTAGGACCAAGCTTGAGCCTAGGGCAAGAAAGTGTGTTTTTCTTGG CTACAAAAGAGGTACAAAAGGTTATGTTGTCCTTGATATTAACAACAGGGAAATATTCCTGTCTAGACATGTCATCTTCTATGAGCATATTTTTGCTTAT GGAAATTTAGAAGATAAGGATCAAATCACTTCATCTAATCCCACTGTCAGCTCTGATTTTATGGACAATTGTGATCCTGTTAGCAATAGTCATGGATTAG ATGTTCCTAGGTCTTCTAGCACTAGTGTCCCAAGCACTACTACTACCCCTGAGCAGCCTGCAAACCTAGACAACTTTGACCCTAACCATACAGAGTCTGA TCAAAATGACCTTAGAAGGTCAAGTAGAATTAGGGGTCCACCAACTTATTTGAAGGATTTTCATTGCAATTCTTTTAGGGTTGATGAAACCAAGGTGACA CACCCCTTATCTGCTGTTCTATCTTATAGTTCCTTACTTCCTGCACACCTCAGTCACACTTTGGCCATATCAACACATGATGAGCCAAAACATTATAACC AAGCCATCACCTCACAGTATTGGATAGAGGCTATGCAAAATGAACTCAATGCCTTAGAGCTAAATAAGACTTGGACCTTAGTTGACTTACCTAGTGATAA GAGGGCCATAGGTTGTAAGTGGGTGTATAAGATCAAATATAAGTCAGATGGAACTATAGAAAGATATAAAGCTAGACTTGTAGCAAAGGGGTACAATCAA ATAGAAGGCTTAGACTACTTTGATACTTTTGCCCCTGTTGTGAAATTAACAACAGTAAGGCTTCTTCTTGCCATAGCTTCTTCACAAAACTGGTTCATTC ATCAATTAGATGTCAATAATGCCTTTTTGCATGGAGATCTTGATGAGGAAGTTTACATGACAATTCCTCAAGGGGTTGTCTGTGGTGAAGCAAACAAGGT TTGTAAGCTGCATAAGTCCCTTTATGGTCTTAAGCAGGCAGGAAGACAATGGTTTACTAAGTTGTCTCAGTACCTTGTTTCACTAGGCTATGTGCAGTCT CATCATGATCATTCCTTGTTTACCAAGAAATCCAAGAATCTGTTTACTTCACTGCTCATATATGTAGATGATTTGTTGTTGGCAGGGAATGACAAAGCTG AAATTGATCATGTAAAGAATTGTCTTCATGATCAATTCAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_147103; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_315075
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.87% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.96% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019450585.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14244.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |