| Id Trinity | TRINITY_DN46805_c1_g3_i1 |
|---|---|
| Name Transcript | Ll_transcript_511599 |
| Sequence | CCCATCCTTAGAAAATCCACAGATTCATCGATAGTATGAATTCCGCATAAACCAGGTACCTCTTCATCTTCATTATTCATTATTCATTATTCATTATTGT TAATCATCGATTATTCCCTCATTCCGACGCGACTCTCTTTCTTCTCCAGGGTTAGGGTTAGGGTTAGGGTTTTCATTGTTCCGCTTTTACGATTTGTTTT TTGAATTGTTCCCGTGCCTTGGATCTGCATCAGGGAGGAGGCAGTGGCTGGTGGTGTTGGTTGTGTTGGTGGTTTTGCTGATCAGTTGTTGTAGAGGTTA AGGAAGAAAAAGTGTTGAAAATGAGTTCAGACAGCAGGAGTCGGAGCAGAAGCAGGAGCAGGAGCCCAATGGATCGTAAGATCCGCTCTGATCGGTTTTC CCATCGTGAAGCACCTTACCGGAGAGACTCACATCGGGGTTTCAGGTTTTTTTGTTGGATTTTGACTATTTACTTACTGCTTGCTTAAGCCGCTTAGGGA GGGTAAAGAGGACTGAGACTCTGCTATGCTAGAAGAAGCTTTTAATCTTTATTGTGCCATTTGTTAAACCTTAGGCTTTGCCTTTTCATTTTTTGTTTTT GTGGTATGTCTTGTATGATTACTTTGGAACCTAAATCTGTGTTTCCTTTCTCTGAGATGGTTTGTTTTGCTTTTTAGCTACAAAAATACCGTAGTGGCTG TACTGAGCCATGTGACACTAGCATTGTATGCTAATATTTTTCAAATAGTAACACTAATTTTATTATTTTTGGTCAGCCGAGACAATTTATGCAAGAACTG CAAGAGGCCTGGTCATTATGCAAGAGAATGCCCTAATGTTGCAATTTGCCACAATTGTGGCCTCCCTGGGTATGGTCACTTATTCTTTTGTTGTTAAGAA CTGTGCATGCTATTCCACAATGTCCTGCTTGCTATTAACTATAATAGTTTCAGATGGTAAAATTATATGATATATGCCAATAAGCATTATGCCGGAGTAG TTAGTTTTTATGATTCTACATTTCTACTTGTGAATGCTTGATCAGGCACATTGCTTCTGAATGCTCCACAAAATCGCTGTGTTGGAATTGCAAGGAACCT GGTCACGTGGCCAGTAACTGTCCAAATGAAGGCATTTGCCACACCTGTGGTAAAGTTGGACACCGAGCTAGAGAGTGCTCTGCTACTCCAATGCCTCCAG GGGACTTAAGGTTGTGCAACAACTGTTATAAGCAGGGCCACATTGCAGTTGAATGTACAAATGAGAAGGCATGCAACAACTGTAGGAAGACTGGCCACCT GGCACGTGATTGTCCAAATGACCCCATTTGCAACTTGTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCAAAAGCAAATGATCTTGGAGAACGCTTT CGTGGCGGTGGAGGTGGCGGTGGAATTCGTGGCGGTGGTTACCGAGACCGAGATGTTGTATGCAGGAACTGCCAGCAGTTGGGTCACATGAGTAGGGATT GCATGGTGCCCTTGATGATTTGTCACAATTGTGGGGGGCGTGGCCACCTGGCTTATGAATGCCCTTCGGGCCGGATGATGGATCGATACCCAAGGAGGTA CTGATGGATGACAAATTTATGTGTAAGGTTATCATTGTTGTTTATGTGGACCTGGTTTATTTTCTTTGATTTTCTCTCAGAGCAGATTGTGGATTCTTGA TAGTGTACGTTTTTTGTTGCTATGTTTTACTTGGTCGGAATAAGAATGATAAGAGATACTGTATTGTGTGCATTGTATTACCCTATTTCCAGATGATGCT ATTTGTTGCTATTGGTCCACTTCGAGCTTTTCGGGTAATCTTGTTTTTTTGGCTACACTTTACACGATATCCTATTACTTTTCTACTGTC BLAST |
| Tissue | pods |
| Gene name | LI_gene_147291; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_511599
| Blastp | ATP-dependent RNA helicase glh-4 from Caenorhabditis with 35.56% of identity |
|---|---|
| Blastx | Zinc finger protein GIS2 from Saccharomyces with 31.07% of identity |
| Eggnog | purine NTP-dependent helicase activity(ENOG410XNTI) |
| Kegg | Link to kegg annotations (CELE_T12F5.3) |
| CantataDB | Link to cantataDB annotations (CNT0002751) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019438188.1) |
| Pfam | Zinc knuckle (PF13917.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |