| Id Trinity | TRINITY_DN46822_c8_g2_i23 |
|---|---|
| Name Transcript | Ll_transcript_513595 |
| Sequence | TAATCGTTAAGCTTCAATTCCAAAAGTAGATGAGAAGAACTACGAATACGAAGAAGAACCAACCACAGTAACAACAAAGCACAAATGGATTTCACTGAGA AAGATCTTTTCGGCGAAGATTCCGACAACGATAAAGACGGGACCCACTCTTCTTCCCGTTCTTCTTCACCATCGTCCTCCTCTTCCTCCTCTTCATCATC TTCCTCTTCTTCCTCCAACGCCAGTCACCGCGGCGGCGCCGACTCCAGCTCCACCAGTGGAAGCGGCGGCGGCGTTGATGACGATGAAGAAGATAATACC AGCAAAGCATATTCCTCTCATCAAGATCATGATGAAGAAGACTATAACGAAGATAGAGATCTATTTGATTCTGATAATGAAGATTACTGTAAAACCCTCG CTAAAAGTCCTCACCCTATTCCTGGTAAAATTTTCTCTCCATTCTTTAACTAATAGACATTCCTACTATATTTCATGCCTTTGTTGTGTTCGTGGAAAAT AGTGTAGACATAACGTGTTATATTATATCAACATTTTCGAATGTCTAAGACCGTGTATGCCTTATTATTAGTCATAACCAAAACATTAATATGTTGTGTT GTTTGTTCCTTTCATTTTCTTCTGACAGAATGTTTAATTCATTGCATCTACATGGCATTTTTAGGACTGCCATCTATGAACTACTATGTAGTTGTCATGT TTGTGTCTGACATTTTTTGATACTACTAACAGTATTTCACATAGTTTTTTTACTTATTGATTTTTACACTTTTATACATGATTTAACATATTAATTAGAT AAATGTTAGTAGTTTATTCCATTTATAACAAATCATGCTTACTTTTAAACCAGTATTTCTCTTTCGATTTAAGACTGGTGCTTTTATATTAATTTTATAT ATTTTATCATAGTTGTGTTGTGTCATATAAAATGACAGTCCATAGAATGTGGAAGCCTCCCACCTGGTGGGGTCTACGGAGGATATGTTTCTACCGTCTT ACTCCCAAACTTAACATTGATTTCTATTCATGACCCACTTTGTATCAATGCTTACTAGACTACCATCATACTATGATGCTTCTGAATTGCTGCAGCAGTT GAAAAATGTCAATGAATTAAATAAAATGACATTGCTTGATTTTCTTTCTTAATTCGTTTTTATGGCAAGATGTGATTTTTTCTGGCAGTATTGCCTGCCA TTCGCAACGTTAATAATCCGGGTAGAGGGGGTTTTGGTCGTGGTCGATGGCAGCCCGGACATCAAAATGATAGGGGAGCAGGCCTTCTTCCTCGTCCTGG ACCATATCCGCACAGACAAAACTTTGGGTATGGTAACAGGTTTCAGAATGGCCATCGTGATGAACGATTTGTATCTGATATGAAGCTTACCAAGAGTGAA GAGACTCTGTCAAGGAAGTGCATTGCTTTTCAAGAGCCATGTGAAATTGGCTGCTATAGTCGGGTAGAAGGCGGGCAAGTATATTTTGACGATCGTAGCT TGAGGCTTTTTAAGCGCCTTATAACTGAAGATGTTGGAGCTGATTTGAATGAAGGTTATGATACATTTGTACCTAAAAAAGACTTAGGCTCAGAGGGCTT CGGCGATCTTCTTGCTTGTATTAGAGATAAAAATATCCCCCTTCAAAATATTCATTTTGTGACATATCGTAACAATCTTAATAAGATACTTGCTACAGCT TATGCCCGTCACGAGCCTTGGGAAATGGGGGTGCACAAAAGGAATGGTGTTGTCTATCTTGATGTGCATAGCCTACCAGAGAGACCACAAAGGGATATTG ACCGCAGGAGATGTTATTGGGGATATTGTTTTGAGAGCCTTGCAACTGAAGATCCTAATCGAGCTGTTGGAGAGGGGATACATCATGTTGATGCAAATGT TGAATTCTGTTCTTTGATTAAGACAAAATTAGGGGCTCACCGTATCTTGATGGGTGCTGAGATGGATTGCTGTGATTCGACTGATGATGGAAAGAGGTTT TATGTGGAGTTAAAGACAAGTCGTGAGTTGGATTATCATACTGAGGAAAGATTTGAGAGGGAGAAACTACTAAAGTATTGGATTCAATCATTCCTGGCTG GTGTCCCATATATTGTCATAGGGTTTAGGGATGACGGTGGTCGTCTTGTTCGGACAGAAAGACTTAGAACCAAAGATATAACACAGAGGGTAAAAACAAA GAACTACTGGCAGGGAGGAGTCTGCTTGGCATTTGCTGATGAAGTGTTATGCTGGCTTTATGGAACCGTCAAAGAAAATGAAGATTACATATTGCAGTTT GCCCCACCTTTCAATCGTTTGGAACTTTTGCAAGGACAATCATGCCCAGATGTAATTACTAGTCATCTGGATCTTTTGTAAACAACTATTTGAAACTTAA CTATTATTTAAACAATGGAAGAGGGAATCAAATTGGGATTCCCCTGTAGCTTTAATTAGGACTTGAACAACGAGGATATTTTGGTACTCTACGTGATTAC TGAGACATTTTAATATAAAAACTTGCGGAAAATATTATGCTGTTGTTATTTTGGAAAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_147455; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_513595
| Blastp | Decapping nuclease DXO homolog, chloroplastic from Arabidopsis with 79.28% of identity |
|---|---|
| Blastx | Decapping nuclease DXO homolog, chloroplastic from Arabidopsis with 74.81% of identity |
| Eggnog | Ribonuclease that specifically degrades pre-mRNAs with a defective 5' end cap and is part of a pre-mRNA capping quality control. Has decapping and pyrophosphohydrolase activities. Has decapping activity toward incomplete 5' end cap mRNAs such as unmethylated 5' end-capped RNA to release GpppN and 5' end monophosphate RNA. Also possesses RNA 5'-pyrophosphohydrolase activity by hydrolyzing the 5' end triphosphate to release pyrophosphates(ENOG410ZAFR) |
| Kegg | Link to kegg annotations (AT4G17620) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019422194.1) |
| Pfam | RAI1 like PD-(D/E)XK nuclease (PF08652.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |