Ll_transcript_513563

• Id Trinity: TRINITY_DN46822_c8_g2_i3
• Name Transcript: Ll_transcript_513563
• Sequence: GTATTGCCTGCCATTCGCAACGTTAATAATCCGGGTAGAGGGGGTTTTGGTCGTGGTCGATGGCAGCCCGGACATCAAAATGATAGGGGAGCAGGCCTTC TTCCTCGTCCTGGACCATATCCGCACAGACAAAACTTTGGGTATGGTAACAGGTTTCAGAATGGCCATCGTGATGAACGATTTGTATCTGATATGAAGCT TACCAAGAGTGAAGAGACTCTGTCAAGGAAGTGCATTGCTTTTCAAGAGGTAGGGAAACGCCCTTTTCCTGTATTTTACTGCTGCTGCTGCATTGAGCAA TTTAATGTCATTTTATTTAAATAATAAATGACTTCGAGACAATGGCGTAGTTTTTATATCACTTTTTTAAGGTTTCCTCCCTAATTTGACATGGAAGAGG AGATGAAGGGGAAATCTCTGATTTGTACGATAAAAGTCAAGATGACTTTAAATCTAGTGTTTTGTTTCTTTGCCGAGGTTTCATGCTTTATTAATTTGGT ATGTTGTTATTAAATTTCTTATCTGAACAGCCATGTGAAATTGGCTGCTATAGTCGGGTAGAAGGCGGGCAAGTATATTTTGACGATCGTAGCTTGAGGC TTTTTAAGCGCCTTATAACTGAAGATGTTGGAGCTGATTTGAATGAAGGTTATGATACATTTGTACCTAAAAAAGACTTAGGCTCAGAGGGCTTCGGCGA TCTTCTTGCTTGTATTAGAGATAAAAATATCCCCCTTCAAAATATTCATTTTGTGGTATGTACTGTAGTATATATTGATATAAAATTTCATAATTATATA TTATATAATCAAATTTATTTCTGAAGCATGTACATTAATCTTTCTTTTTATCCTTTGCAGACATATCGTAACAATCTTAATAAGGTAGTCCTTTATTCAT TTTGTATTATGTTTGCTGCTGGTCAAAGTCTTGTCATATCATTATATTGTAGAAATTTACGAGACAAGTAGTCATTACCTTGTTAATTGTTGAACTTGGC TATGTCTGATGATGAATGAGCTTGGGAGCTAAATACAGCAGTCTTTACAGATACTTGCTACAGCTTATGCCCGTCACGAGCCTTGGGAAATGGGGGTGCA CAAAAGGAATGGTGTTGTCTATCTTGATGTGCATAGCCTACCAGAGAGACCACAAAGGGATATTGACCGCAGGAGGTACATTGAGGCTTAAATTTTTTAT TTTAATATGCTTGGCCATTTATATTTAATGTGAACGGTGATGAGGAATCAACCAAGGCACTTAGTATCGGTATGTTTGTGTATGAGACGAAGTACCCAAT ACAATAATAAAGGTGTAGATGACAGGGTAAGCGTTGGTGATATCTCGCTAATTGAAATCTCATGTATCCATTGCTCACTATCTTTTTCCCTCAACGTGGC TGAAATGGTGCTTTAGATGGAAACCATGCTGTAAATGCTGTCTTAATTTGTGGTGGAAGATATTGACAATATGGAAAACCGAATGCTATTAAGATGAAGA GTTCTATTTTTAGATTGAAACAGAAAATAGTGAAAAAGCAAAGTTCAGTTTGTAAAGAAAATATTATGTTTTAATGTTTACCAATCAATTGAGAGACAGC CTAGTGATCTCTTACCTCTTTTTTTTCACTTTTTTTATTGGTTTAGATAATATTCGAAATTGTTGGCTTGTTGTGTTTGGCCATTAGATGTTATTGGGGA TATTGTTTTGAGAGCCTTGCAACTGAAGATCCTAATCGAGCTGTTGGAGAGGGGATACATCATGTTGATGCAAATGTTGAATTCTGTTCTTTGATTAAGA CAAAATTAGGGGCTCACCGTATCTTGATGGGTGCTGAGATGGATTGCTGTGATTCGACTGATGATGGAAAGAGGTTTTATGTGGAGTTAAAGACAAGTCG TGAGGTTGACAACATCAGCCTTTAGTTTTTACTTTAACCTCAGCCTTTATGATTGCTATTTTTCTTAGTTGGGTTTATGTTGCTCTAATTGCATGATTAT ATTTTGTAATGATGCAGTTGGATTATCATACTGAGGAAAGATTTGAGAGGGAGAAACTACTAAAGTATTGGGTACAACTCCGATACTTTAACCTCAGCCT TTTTTCTATGCTTTCTGTTAATGTGTTCCTTTTCAATTATGTGCAATGAATTCAACAAGGTCTCCGTTGTTGCTTACAGATTCAATCATTCCTGGCTGGT GTCCCATATATTGTCATAGGGTTTAGGTAATTGTTTTTATTCTTTTATACTTTTAAGTAAATTATTTTATTGGAACTTCACTCACTGTAACTAAATTTAA CATGCTCATGTCAACTCATTGGAATTTGACAAGCTGATGCCAACGTAGCATGGTTGACAAATGAAATCCATACTGCGAGTTGTTTTTCCTGTTTTGTTTT AATATATGTCCACTGTCATGCAGGGATGACGGTGGTCGTCTTGTTCGGACAGAAAGACTTAGAACCAAAGATATAACACAGAGGGTAAAAACAAAGAACT ACTGGCAGGTATATTTTGTCTGCTGTAAGCCTGTAATGTGCACTGTATTTAATATTTGTTTTGGTCGGTATTGCAATACTGTTACAGTTATTGTTACTCC GCCGTCCTTCGAGTGGGTTCTAAACACCAAGTTCCAAATATTAAAATTCCTGCTAGTTCTTTTAGTTATATATCAACATGTATTTATACATACATTACGT GTTTATACACACATTAGCTGATATCATAGCTAATTAAGGGTCATTTACTATCATCTTGAAGATTAAGTGGACAAAATATTAGAAAGCCATATTTAGGCAA CAAATGTTGATTGTGATATTTTTTTCTTCTCTTATTAACAAAATTTGTGGCCAGGGAGGAGTCTGCTTGGCATTTGCTGATGAAGTGTTATGCTGGCTTT ATGGAACCGTCAAAGAAAGTGGGTATTATTTTTCCAGTGTTTTTTTTATTTGGTTGTTTTCAAATATATAGAAATGGAGTAAATCTTGTATAGGCACAAT TTCTATAAGACAACGGATAAAATAAAATGCTGATTAGGCAGTAAATTGTCAATTGAAATTGACACCGAAGTCCTGTGTAGGATCATTTTAATTTTATCTT GTGTTTGCTAAAGTTATCTTGTTTGTGCTGGAACCCGTTTTCTGTCTTCTGTACCCGTAAATGTGTTTATTTCTTGGTTTCAGATGAAGATTACATATTG CAGTTTGCCCCACCTTTCAATCGTTTGGAACTTTTGCAAGGACAATCATGCCCAGATGTAATTACTAGTCATCTGGATCTTTTGTAAACAACTATTTGAA ACTTAACTATTATTTAAACAATGGAAGAGGGAATCAAATTGGGATTCCCCTGTAGCTTTAATTAGGACTTGAACAACGAGGATATTTTGGTACTCTACGT GATTACTGAGACATTTTAATATAAAAACTTGCGGAAAATATTATGCTGTTGTTATTTTGGAAAAAAA
• Tissue: pods
• Gene name: LI_gene_147455;
• Additional information: details;

Expression of Ll_transcript_513563

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0
• PS2: 0
• PS3: 0.1
• PW1: 0.1
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_513563

• Blastp: Decapping nuclease DXO homolog, chloroplastic from Arabidopsis with 58.14% of identity
• Blastx: Decapping nuclease DXO homolog, chloroplastic from Arabidopsis with 78.48% of identity
• Eggnog: Ribonuclease that specifically degrades pre-mRNAs with a defective 5' end cap and is part of a pre-mRNA capping quality control. Has decapping and pyrophosphohydrolase activities. Has decapping activity toward incomplete 5' end cap mRNAs such as unmethylated 5' end-capped RNA to release GpppN and 5' end monophosphate RNA. Also possesses RNA 5'-pyrophosphohydrolase activity by hydrolyzing the 5' end triphosphate to release pyrophosphates(ENOG410ZAFR)
• Kegg: Link to kegg annotations (AT4G17620)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019422194.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;