Id Trinity | TRINITY_DN46840_c0_g1_i2 |
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Name Transcript | Ll_transcript_512700 |
Sequence | CTATACTAAACTTTTCTTTTATCATTTTGTTTATGCTAACTAAGAAAATTTATCTTTTACTTGCACTCTAATCAAACCTTGAAAAGCTAAATGGCAATGT CATTGATAATCAAGTAGCAATATTGTAATTGTGGATCCAAATTCCAAGTATTACTTACAACCCAAAAAACCATGCTAAGGAAAAGTGTTAATCTTAGTAA AAGGAATGTTCTTGTGATGTAATAACAAATTTATTAACATGTAAAAGGAGGAAGAAAATATGAAAAGATGTTAGACATGTATGGTCAGTTCAGGCATAAA GAAACTCAAACTTGGTGTCTTTATACTAATTGACTCATAAGAGGGTACCATAAATCCAAAGCTGAAAGAAACAGAACACTCAGATTGATCATTCACCTTA ACAATATTGATTTAGTGTGTCCATTTCAGAACAGCATGTAAGAGAGATCCTTGAATTTTTGTGTGAAGAAGCCAACAATTTTGTGATAACTCATCACTCA AACACCCCATGTTGGATCCTCCTTATTTCATGAACTATGTTTTGTCTAAGTCACTTTGCTCTTTCCTTTGTTTTTCTTAGTTAAAAGCTATTTTACTTCG ACAAAAAAATCTAGAGCTTTTGCATTCTGTGAATCTGGTTTCAGCTTTGAAGCATGTGGGAATCAGGGAGTGAAGCAGGACAGGAATATGGGACTGGAAT TCTCACTTCAAGCAAGCATAGTGTCAAGACTGAAGGATTTGTTCAAAGAGGCCACTCTTGGTAAGTATAATAGTTAAATGCATGATTAGTATAGCATAGT ACCCTTTAAGGATATTATTAATCTCTTGTGCTAATAAGATATTAATACTTTGTGTTATTTCTAGTGAATTGAGATGACAAAAAAATAAGATTGAGAGTCT TGATAATACTGTTTTGTACTGTTAATTTACCCATCTCAAACTGTTGAAACAATAAGCTGCATAAAATTGTAGTCTCTCTCTTCCTTTTTTTCATGTAGGT ATGTTGCCACTGATATTCCAAGTGACTTCTTAGTTCAAATTGGAGAAGCTAACTTCCACTTGCACAAGGTAGCTACCTATCCTTTTCTCTTTACAAAAAA TTACTATGTAAAGTTATCACTTGTACTATTGAACTTTGTGACTTTTCTTGTTGTTGTGAAAGTATCCTTTGCTATCTAGAAGTGGAAAGCTGAATAGAAT CATAAATGAATCAAGGGACCCTGATTTGAATAAGATAGTTATGGATGATATCCCTGGAGGGCCTGGGGCTTTTGAACTTGCAGCCAAGTTTTGTTATGGA ATTGCTGTTGATTTAACAGCAGGTAATATCTCTGGCCTAAGATGTGCTGCTGAGTATCTTGAAATGACAGAAGACTTAGAAGAAGGGAATCTAATATTCA AGACAGAAGCATTCCTCAGCTATGTTGTTTTGTCTTCATGGAGAGACTCCATAGTGGTGCTGAAAAGCTGTGAGAAGCTCTCACAATGGGCTGAGAACCT TCAAATTGTTCGCCGGTGCAGCGAGTCCATAGCTTGGAAAGCTTGTGCTAATCCAAAGGGTATAAAGTGGTCCTACACTGGAAGAACAGCAAAGATTTCA AGTCCAAAATGGAACAACAATGTGAAAGATTCAAGTCCGAGTATGAACAATCAGCAGGTTCCTAATGATTGGTGGTTTGAAGATGTTTCGATCCTTCGGA TTGATCACTTTGTCAGAGTCATTACTGCTATCAAGGTAAAGGGTATGAGGTTTGAATTGATTGGTGCAACAATAATGCATTATGCAACTAAATGGCTACC AGGGTTGATAAGTGAAACATCAATAACACAAGGTGATGAAGCAAGTATCAGCAGTATTAGTAATAGTAGTACTAGTACTAGTGGTGGTACTTGCTGGAAA GGTGGACTTCATATGATTGTGTCCGGAAACAAAGATGAGAGTTCAAGTGTGCAAGCTAAGGAACAAAGAATGATTATTGAGAGCCTCATAAGCATTATTC CACCTCAGAAGGACAGTGTCTCATGCAGCTTCCTTCTTAGGCTATTGAGGATGGCAAACATGTTAAAAGTTGCACCAGCACTAGTTACTGAATTGGAGAA AAGGGTTGGAATGCAATTTGAGCAAGCTACACTTGCTGATCTTCTTATCCCTTGTTATGAAAAAAGTGAGACTATGTATGATGTGGATCTTGCTCAGAGA CTAGTGGAGCATTTTCTTGTTCAAGAACAGACTGAAAATCCAAGTACACAATCATTCTCTGAAAATCAGATAGGGGGTAGTAATGTAAATGCCAAGGCAA AAGTGGCAAGGCTTGTTGATAGTTATCTTACTGAGGTGTCCAGGGATAGAAACCTTTCCCTCACAAAGTTTCAAGTACTTGCTGAAGCTTTGCCTGAGTC AGCTAGGACCTGTGATGATGGACTTTATAGAGCAATTGATTCCTATCTTAAGGCACATCCAACACTATCTGAGTATGAAAGGAAGAAACTGTGCCGAGTA ATGGATTGTCAGAAACTGTCCATTGATGCATGCATGCATGCTGCACAAAATGAAAGGCTTCCATTAAGGGTAGTTGTACAAGTTCTATTCTCTGAACAAG TCAAAATCAGCAATGCAATAGCCAGCAGTTCTGTGAAAAGTGTTGACTCTCACACTCAGCCAATGGTTATAAACAGAAAAACACTTCTTGAAGGGACACC ATATTCATTCCAAGAAGGATGGGCAAATGCTAAAAAAGACATAAACTCACTCAAGTTTGAGCTAGAGAGTGTGAAAACCAAGTACTTGGAGCTTCAAAAT GATATGGAAAGCTTGCAGAAACAATTTGATAAGATGATGCTGAAGCAGAAGCAAACATCAGCATGGAGCAGTGGGTGGAAGAAACTGAGCAAACTTACAA AGATGACTAATGTAGAGAGCCATCATGGTCATGGTCATGGTCATGGTCTTTCAACTAAGGTTCCAATTTCTGAAGAACAGAACAGAAAGACTACTAGAAG GTGGAGAAATTCTATATCCTGAGAAAGTTGAAGAATTAATATTGAATAATTAGTTCTCTATTTCTTTGAAACTCACTTTTCTGTTTGGTTATATTTCACT TATCTTCTTCTTTTGAACAGTAAATTAATAAGGCTTCAAGTTCTACATGATTCTTGTTCTAGCTAAATTGTAATTTGTCATCAAAGTTAATCATATTTTT CAAGCAAGTTCTATTGGCATTTCAACTATAAATAGATGATGG BLAST |
Tissue | pods |
Gene name | LI_gene_147605; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_512700
Blastp | Root phototropism protein 3 from Arabidopsis with 68.85% of identity |
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Blastx | Root phototropism protein 3 from Arabidopsis with 69.86% of identity |
Eggnog | cellular response to blue light(ENOG41110QX) |
Kegg | Link to kegg annotations (AT5G64330) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019418794.1) |
Pfam | NPH3 family (PF03000.13) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |