| Id Trinity | TRINITY_DN46840_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_512704 |
| Sequence | GTGTGTCCATTTCAGAACAGCATGTAAGAGAGATCCTTGAATTTTTGTGTGAAGAAGCCAACAATTTTGTGATAACTCATCACTCAAACACCCCATCTTT GAAGCATGTGGGAATCAGGGAGTGAAGCAGGACAGGAATATGGGACTGGAATTCTCACTTCAAGCAAGCATAGTGTCAAGACTGAAGGATTTGTTCAAAG AGGCCACTCTTGGTAAGTATAATAGTTAAATGCATGATTAGTATAGCATAGTACCCTTTAAGGATATTATTAATCTCTTGTGCTAATAAGATATTAATAC TTTGTGTTATTTCTAGTGAATTGAGATGACAAAAAAATAAGATTGAGAGTCTTGATAATACTGTTTTGTACTGTTAATTTACCCATCTCAAACTGTTGAA ACAATAAGCTGCATAAAATTGTAGTCTCTCTCTTCCTTTTTTTCATGTAGGTATGTTGCCACTGATATTCCAAGTGACTTCTTAGTTCAAATTGGAGAAG CTAACTTCCACTTGCACAAGGTAGCTACCTATCCTTTTCTCTTTACAAAAAATTACTATGTAAAGTTATCACTTGTACTATTGAACTTTGTGACTTTTCT TGTTGTTGTGAAAGTATCCTTTGCTATCTAGAAGTGGAAAGCTGAATAGAATCATAAATGAATCAAGGGACCCTGATTTGAATAAGATAGTTATGGATGA TATCCCTGGAGGGCCTGGGGCTTTTGAACTTGCAGCCAAGTTTTGTTATGGAATTGCTGTTGATTTAACAGCAGGTAATATCTCTGGCCTAAGATGTGCT GCTGAGTATCTTGAAATGACAGAAGACTTAGAAGAAGGGAATCTAATATTCAAGACAGAAGCATTCCTCAGCTATGTTGTTTTGTCTTCATGGAGAGACT CCATAGTGGTGCTGAAAAGCTGTGAGAAGCTCTCACAATGGGCTGAGAACCTTCAAATTGTTCGCCGGTGCAGCGAGTCCATAGCTTGGAAAGCTTGTGC TAATCCAAAGGGTATAAAGTGGTCCTACACTGGAAGAACAGCAAAGATTTCAAGTCCAAAATGGAACAACAATGTGAAAGATTCAAGTCCGAGTATGAAC AATCAGCAGGTTCCTAATGATTGGTGGTTTGAAGATGTTTCGATCCTTCGGATTGATCACTTTGTCAGAGTCATTACTGCTATCAAGGTAAAGGGTATGA GGTTTGAATTGATTGGTGCAACAATAATGCATTATGCAACTAAATGGCTACCAGGGTTGATAAGTGAAACATCAATAACACAAGGTGATGAAGCAAGTAT CAGCAGTATTAGTAATAGTAGTACTAGTACTAGTGGTGGTACTTGCTGGAAAGGTGGACTTCATATGATTGTGTCCGGAAACAAAGATGAGAGTTCAAGT GTGCAAGCTAAGGAACAAAGAATGATTATTGAGAGCCTCATAAGCATTATTCCACCTCAGAAGGACAGTGTCTCATGCAGCTTCCTTCTTAGGCTATTGA GGATGGCAAACATGTTAAAAGTTGCACCAGCACTAGTTACTGAATTGGAGAAAAGGGTTGGAATGCAATTTGAGCAAGCTACACTTGCTGATCTTCTTAT CCCTTGTTATGAAAAAAGTGAGACTATGTATGATGTGGATCTTGCTCAGAGACTAGTGGAGCATTTTCTTGTTCAAGAACAGACTGAAAATCCAAGTACA CAATCATTCTCTGAAAATCAGATAGGGGGTAGTAATGTAAATGCCAAGGCAAAAGTGGCAAGGCTTGTTGATAGTTATCTTACTGAGGTGTCCAGGGATA GAAACCTTTCCCTCACAAAGTTTCAAGTACTTGCTGAAGCTTTGCCTGAGTCAGCTAGGACCTGTGATGATGGACTTTATAGAGCAATTGATTCCTATCT TAAGGCACATCCAACACTATCTGAGTATGAAAGGAAGAAACTGTGCCGAGTAATGGATTGTCAGAAACTGTCCATTGATGCATGCATGCATGCTGCACAA AATGAAAGGCTTCCATTAAGGGTAGTTGTACAAGTTCTATTCTCTGAACAAGTCAAAATCAGCAATGCAATAGCCAGCAGTTCTGTGAAAAGTGTTGACT CTCACACTCAGCCAATGGTTATAAACAGAAAAACACTTCTTGAAGGGACACCATATTCATTCCAAGAAGGATGGGCAAATGCTAAAAAAGACATAAACTC ACTCAAGTTTGAGCTAGAGAGTGTGAAAACCAAGTACTTGGAGCTTCAAAATGATATGGAAAGCTTGCAGAAACAATTTGATAAGATGATGCTGAAGCAG AAGCAAACATCAGCATGGAGCAGTGGGTGGAAGAAACTGAGCAAACTTACAAAGATGACTAATGTAGAGAGCCATCATGGTCATGGTCATGGTCATGGTC TTTCAACTAAGGTTCCAATTTCTGAAGAACAGAACAGAAAGACTACTAGAAGGTGGAGAAATTCTATATCCTGAGAAAGTTGAAGAATTAATATTGAATA ATTAGTTCTCTATTTCTTTGAAACTCACTTTTCTGTTTGGTTATATTTCACTTATCTTCTTCTTTTGAACAGTAAATTAATAAGGCTTCAAGTTCTACAT GATTCTTGTTCTAGCTAAATTGTAATTTGTCATCAAAGTTAATCATATTTTTCAAGCAAGTTCTATTGGCATTTCAACTATAAATAGATGATGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_147605; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_512704
| Blastp | Root phototropism protein 3 from Arabidopsis with 68.85% of identity |
|---|---|
| Blastx | Root phototropism protein 3 from Arabidopsis with 69.86% of identity |
| Eggnog | cellular response to blue light(ENOG41110QX) |
| Kegg | Link to kegg annotations (AT5G64330) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019418794.1) |
| Pfam | NPH3 family (PF03000.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |