Id Trinity | TRINITY_DN46854_c1_g4_i3 |
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Name Transcript | Ll_transcript_513661 |
Sequence | GAGAGATTAGATCCTGATCCAGAGAGAGAGAGAGAGAGAGAAGTTAGGGTTTAGCAATAGCTACGATTCGAGTAAGAGAGCGACGATGGATCCAGAAATC GCAAAGACGCAGGAAGAGCGTAAGAGAATGGAGCAAGAACTCGCATCACTTAACGCCACATCAGTAGTCTACGATAGAGATCTCTACGGTGGAAGCGACA AAGATTCCTACCTCACTTCAATTCCAGCTAACGAAGACGACGACAATGTTGACGCCATGGACAACGAGGTCGCTCGCAAACTCGCCTCCTACACCGCGCC CAAATCGCTATTGAAGGAGATGCCCGGTTCCACTGGCTCCGATGCTGACGCTGAAATGGGGTTTCGGAAGCCATCCAGGATCTATGATCGTGAAGATGAA TATCGACGTAGAAGATTGAATCAGGTTATCTCACCGGAACGGCACGATGCGTTTGCCGCTGGTGAGAAGACGCCGGACCCGACGGTTAGAACCTATGCTG ATATCATGAGGGAGGAGGCGTTGAAGAGGGAGAAAGAGGAAACTCTAAAACTTATTGCCAAGAAAAAGAAAGAGGAAGAGGAAGCTGAGAAATCCGCGCC TGAGAAGGATAAGGCTCAGAAGAGGAGGAATAGGTGGGACATGTCTCAGGATAATGAAGGAGCCGCGAAAAAGGCGAAGGCATCGGATTGGGACATGCCA GATAATGCTGCCACGCCTGGGAAGTGGGATGCTACTCCCACGCCCGGGAGAGTGATTGATGCGACTCCAGGGAGGAGAAACCGTTGGGATGAGACTCCAA CCCCTGGGAGAATTGTTGATTCTGATGCCACTCCGGCCGGTGGTATGACTCCCGGTGCAACCCCTGCAGGGACATGGGATGCCACACCGAAGCTTCCGGG CATGGCTACACCGACTCCGAAGAGGCAAAGGTCAAGGTGGGATGAGACACCTGCTACAATGGGAAGTGCAACTCCTTTACCAGGTGCAACACCTGCTGCT GGTTATACACCTGGTGTTACACCCGTTGGAGGGGTTGAGTTGGCCACACCGACACCAGGTGCGCTGCGTGGTGCTATAACGCCAGAGCAGTATAATTTGT TGAGGTGGGAGAGGGATATTGAAGAGAGGAATAGGCCTTTGACTGATGAGGAGCTTGATGCAATGTTTCCACAGGAAGGGTATAAGGTTTTGGACCCTCC TGCTTCATACGTGCCAATTAGGACCCCAGCGAGGAAGCTTCTTGCTACCCCAACTCCTTTAGGAACACCACTGTATCAGATTCCAGAGGAGAATCGTGGG CAACAGTTTGATGTTCCAAAGGAAGCACCTGGTGGGTTGCCGTTTATGAAGCCCGAGGATTATCAGTATTTTGGAGCATTGTTGAACGAGGAGGATGAGG AGGAGTTGTCGCCAGATGAGCAGAAAGAGAGGAAGATAATGAAGCTTTTGCTTAAGGTGAAGAATGGGACACCACCACAGAGGAAAACTGCTTTGAGACA GCTTACCGATAAGGCTCGCGAGTTTGGTGCTGGCCCATTGTTTAACAGGATTCTTCCTTTGCTTATGCAGCCTACTTTGGAGGATCAAGAGAGACATCTT TTGGTTAAGGTAATTGATAGAGTTTTGTATAAGTTGGATGAGTTGGTCAGGCCTTATGTCCATAAGATTCTTGTTGTTATTGAACCCTTGTTGATTGATG AAGATTACTATGCCCGTGTTGAGGGTAGAGAAATTATATCTAACCTGAGTAAGGCTGCTGGGTTGGCCACTATGATCGCAGCTATGCGGCCTGATATAGA CAACATTGATGAATATGTGAGAAATACTACTGCTAGGGCTTTCAGTGTTGTTGCATCTGCTCTTGGTATTCCTGCACTGTTGCCCTTTTTGAAGGCTGTT TGTCAGAGTAAGAAGTCATGGCAGGCTCGGCACACTGGGATTAAGATTGTGCAACAAATTGCAATTTTAATTGGTTGTGCTGTTTTGCCACATTTGAGGT CTCTTGTGGAAATTATTGAGCATGGTCTGAATGATGAGAATCAGAAGGTGAGAACTATCACTGCACTGTCTCTTGCTGCTCTTGCCGAGGCTGCTGCTCC TTATGGTATTGAAAGTTTTGATTCTGTTTTGAAACCACTGTGGAAGGGTATCAGACAGCATCGTGGGAAGGTTTTGGCTGCGTTTTTGAAGGCAATTGGT TTCATCATTCCGCTGATGGAAGCCCTATATGCCAGTTACTATACTAAGGAAGTCATGATTATTCTGATTCGTGAGTTCCAGTCACCTGATGAAGAAATGA AGAAAATTGTTCTGAAAGTGGTGAAGCAGTGTGTGAGCACTGAGGGTGTGGAAGCTGATTATATTAAGAGTGATATCCTTCCTGAATTTTTCAAGAATTT CTGGGTTAGGAGGATGGCTTTGGATCGCCGAAACTATAAGCAGCTTGTGGAGACGACTGTGGAGATAGCAAACAAAGTTGGTGTTTCTGATATTGTTGCG AGAATTGTTGAGGATCTCAAAGATGAGAGTGAACCCTATAGGCGTATGGTTATGGAAACTATTGAGAAGGTGGTCACTAACTTGGGAGCTTCTGATATAG ATTCCCGGTTGGAAGAGCTTCTGATTGATGGTATTCTTTATGCCTTCCAAGAGCAGACAAGTGATGATGCTAATGTGATGCTTAATGGGTTTGGAGCAGT TGTCAATTCTCTTGGGCAAAGAGTGAAACCATATCTTCCTCAGATTTGTGGTACTATCAAGTGGCGGTTAAATAACAAGAGTGCAAAGGTGAGACAGCAA GCAGCTGACCTTATTTCAAGGATTGCTGTTGTCATGAAGCAGTGTCATGAGGAACAACTGATGGGTCACCTTGGTGTTGTCTTATACGAGTATTTGGGAG AAGAGTATCCTGAAGTTTTGGGCTCAATTCTTGGAGCTCTCAAGTCCATTGTCAATGTTATTGGTATGACAAAGATGACTCCTCCTATTAAGGATTTGCT TCCCAGGTTAACACCCATTTTGAAGAATAGGCATGAGAAGGTCCAGGAGAACTGTATTGACCTTGTTGGTAGAATTGCTGATCGTGGTGCTGAGTTTGTA CCAGCAAGAGAGTGGATGAGAATCTGTTTTGAGCTTCTTGAGATGCTTAAGGCACACAAGAAGGGAATTCGTAGAGCCACAGTTAACACTTTCGGGTATA TTGCGAAAGCTATTGGACCACAGGATGTGTTAGCAACTCTACTGAATAATCTCAAAGTGCAGGAGAGGCAGAACCGTGTCTGCACTACGGTAGCCATTGC AATAGTGGCGGAAACATGTTCACCCTTCACAGTTTTGCCAGCTTTGATGAATGAGTACCGTGTGCCGGAGCTTAATGTGCAAAATGGTGTCCTGAAGTCT CTCTCTTTTCTCTTTGAGTACATTGGTGAAATGGGAAAGGATTACATCTACGCAGTGACTCCCTTGCTTGAGGATGCTCTTATGGACAGGGATTTGGTTC ATAGGCAGACCGCGGCTTCTGCTGTGAAGCACATGGCACTAGGAGTGGCTGGTTTGGGTTGTGAGGATGCACTGGTACATTTGCTGAACTTTGTCTGGCC TAACATATTTGAAACTTCTCCTCATGTGATCAATGCTGTGATGGAAGCCATTGAAGGAATGAGGGTTGCGTTGGGTGCTGCTGTTGTTCTTAACTACTGT CTCCAAGGGCTGTTCCACCCGGCTCGAAAAGTTAGGGAAGTGTACTGGAAGATCTATAACTCACTGTATATTGGTGCTCAGGATGCTCTTGTTGCTGCAT ACCCTGCTCTGGAGGATGAGCAAAGCAATGTCTACAGTAGACCAGAGTTGATGATGTTCATTTAGATTGCAGTTTAGGCTGTTGGGAACTGTCTTTAAGA CATTTTGCAGTTGTTGGCGATGTCCATATTTGCAATAACTTATCACTTAAAACTATCATGATCTCATAATGCTACGTTGTATGTTCATTAAAACTGGCCC ATACTATAGCTCAGTGTGCATGACTGGGATTCCTTATTATCTGATGAGTTGTTATTTGTTTATTTTGTGTATGATGTGGTCATTATATCTAATAGCACCT TTGGTTTGACAGAAAGGAATAAGACTTCTTATTCCCTCTTTGGTTGAGAATTAAGACAGGCAGTTCCCTAATTTGGAGGGGTTGGCACTACATAACAAAA CTACAGAGTAGTGCCTTTCCTGGTCATAGCTCTCCTCCAGCCACATATTCTCTGCCTATAGGTTTGGCTCTCCTTATCTGATTATCTTGGATGAATTTTT TGTTGAGGGAGTTGAATGTTGCTCATGAATATTCACCCTCATTCTTTGATTGTCACTTTTCCCTCTGTAGGTGTTGAATTCTGATTCTTTTTTTGTAGGA GTTGGTTACTGGTATTGTTTCTGATTTTAGAATGATATCCAATTAGCTTTGGTGTTGTTCAATATAGTAAGGTTGTGTATTTTGACTGGAAGCTGATTGA TAAAGTGTTTTATGTAATTCTTAAAGGAGGGTTACCAGGAACGTATACTTACTCATATTTGAGTGGGTTTTCATTAGCAATATGAAGTTTTGATTCCCTA CCAGAAAGTAAATACTAAAATGGAGTTCACCTGAATAATACTCTTAACTTCCATGTTCTTTTAATCTAAAGGGAAGGGGCGTTTCTACTTTTTAGAGCTT GTATAGTTTGCATTAGTTTTTCTTGATGTGTTATGGTTATACTTCTATATCCAATATTATATACATGTCATGAATGTTTCTTGCAGAAAAAAGTTACTGT TTCGGGGCTAATGATTTTGGATTTACTTCTGTGAACTATATTCTGCCAATACAATCTGGTAGCATTTGTGATTGTTTGGTAATGTTTACATTTTCAGGCA AAGAGAATGAGGGCATTTAGAGTTTTACTACTTACTGATTGTACACCATTACTGGAGATCCTGTTGAGGAACTGCTTCAAAATAAGAAAGTAGTTTTGCA AACTCATGCTCTCAACTCTCAAATGGTGTTTCACCAACTATAATGTTCATGGCTAGCTTTCAATAATTGGAATAAGATCCCGTTTTATGAGTGTTTTTAA CTGTAAATTTGACTCAAGTAATATAGATTGATATGGTTTGATTATAATTTAGATTTATCATTTGCATATTACAAGTAAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_147712; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_513661
Blastp | Splicing factor 3B subunit 1 from Xenopus with 69.51% of identity |
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Blastx | Splicing factor 3B subunit 1 from Xenopus with 68.7% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (399336) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019440342.1) |
Pfam | Splicing factor 3B subunit 1 (PF08920.9) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |