Ll_transcript_513667

• Id Trinity: TRINITY_DN46854_c1_g4_i4
• Name Transcript: Ll_transcript_513667
• Sequence: GAGAGATTAGATCCTGATCCAGAGAGAGAGAGAGAGAGAGAAGTTAGGGTTTAGCAATAGCTACGATTCGAGTAAGAGAGCGACGATGGATCCAGAAATC GCAAAGACGCAGGAAGAGCGTAAGAGAATGGAGCAAGAACTCGCATCACTTAACGCCACATCAGTAGTCTACGATAGAGATCTCTACGGTGGAAGCGACA AAGATTCCTACCTCACTTCAATTCCAGCTAACGAAGACGACGACAATGTTGACGCCATGGACAACGAGGTCGCTCGCAAACTCGCCTCCTACACCGCGCC CAAATCGCTATTGAAGGAGATGCCCGGTTCCACTGGCTCCGATGCTGACGCTGAAATGGGGTTTCGGAAGCCATCCAGGATCTATGATCGTGAAGATGAA TATCGACGTAGAAGATTGAATCAGGTTATCTCACCGGAACGGCACGATGCGTTTGCCGCTGGTGAGAAGACGCCGGACCCGACGGTTAGAACCTATGCTG ATATCATGAGGGAGGAGGCGTTGAAGAGGGAGAAAGAGGAAACTCTAAAACTTATTGCCAAGAAAAAGAAAGAGGAAGAGGAAGCTGAGAAATCCGCGCC TGAGAAGGATAAGGCTCAGAAGAGGAGGAATAGGTGGGACATGTCTCAGGATAATGAAGGAGCCGCGAAAAAGGCGAAGGCATCGGATTGGGACATGCCA GATAATGCTGCCACGCCTGGGAAGTGGGATGCTACTCCCACGCCCGGGAGAGTGATTGATGCGACTCCAGGGAGGAGAAACCGTTGGGATGAGACTCCAA CCCCTGGGAGAATTGTTGATTCTGATGCCACTCCGGCCGGTGGTATGACTCCCGGTGCAACCCCTGCAGGGACATGGGATGCCACACCGAAGCTTCCGGG CATGGCTACACCGACTCCGAAGAGGCAAAGGTCAAGGTGGGATGAGACACCTGCTACAATGGGAAGTGCAACTCCTTTACCAGGTGCAACACCTGCTGCT GGTTATACACCTGGTGTTACACCCGTTGGAGGGGTTGAGTTGGCCACACCGACACCAGGTGCGCTGCGTGGTGCTATAACGCCAGAGCAGTATAATTTGT TGAGGTGGGAGAGGGATATTGAAGAGAGGAATAGGCCTTTGACTGATGAGGAGCTTGATGCAATGTTTCCACAGGAAGGGTATAAGGTTTTGGACCCTCC TGCTTCATACGTGCCAATTAGGACCCCAGCGAGGAAGCTTCTTGCTACCCCAACTCCTTTAGGAACACCACTGTATCAGATTCCAGAGGAGAATCGTGGG CAACAGTTTGATGTTCCAAAGGAAGCACCTGGTGGGTTGCCGTTTATGAAGCCCGAGGATTATCAGTATTTTGGAGCATTGTTGAACGAGGAGGATGAGG AGGAGTTGTCGCCAGATGAGCAGAAAGAGAGGAAGATAATGAAGCTTTTGCTTAAGGTGAAGAATGGGACACCACCACAGAGGAAAACTGCTTTGAGACA GCTTACCGATAAGGCTCGCGAGTTTGGTGCTGGCCCATTGTTTAACAGGATTCTTCCTTTGCTTATGCAGCCTACTTTGGAGGATCAAGAGAGACATCTT TTGGTTAAGGTAATTGATAGAGTTTTGTATAAGTTGGATGAGTTGGTCAGGCCTTATGTCCATAAGATTCTTGTTGTTATTGAACCCTTGTTGATTGATG AAGATTACTATGCCCGTGTTGAGGGTAGAGAAATTATATCTAACCTGAGTAAGGCTGCTGGGTTGGCCACTATGATCGCAGCTATGCGGCCTGATATAGA CAACATTGATGAATATGTGAGAAATACTACTGCTAGGGCTTTCAGTGTTGTTGCATCTGCTCTTGGTATTCCTGCACTGTTGCCCTTTTTGAAGGCTGTT TGTCAGAGTAAGAAGTCATGGCAGGCTCGGCACACTGGGATTAAGATTGTGCAACAAATTGCAATTTTAATTGGTTGTGCTGTTTTGCCACATTTGAGGT CTCTTGTGGAAATTATTGAGCATGGTCTGAATGATGAGAATCAGAAGGTGAGAACTATCACTGCACTGTCTCTTGCTGCTCTTGCCGAGGCTGCTGCTCC TTATGGTATTGAAAGTTTTGATTCTGTTTTGAAACCACTGTGGAAGGGTATCAGACAGCATCGTGGGAAGGTTTTGGCTGCGTTTTTGAAGGCAATTGGT TTCATCATTCCGCTGATGGAAGCCCTATATGCCAGTTACTATACTAAGGAAGTCATGATTATTCTGATTCGTGAGTTCCAGTCACCTGATGAAGAAATGA AGAAAATTGTTCTGAAAGTGGTGAAGCAGTGTGTGAGCACTGAGGGTGTGGAAGCTGATTATATTAAGAGTGATATCCTTCCTGAATTTTTCAAGAATTT CTGGGTTAGGAGGATGGCTTTGGATCGCCGAAACTATAAGCAGCTTGTGGAGACGACTGTGGAGATAGCAAACAAAGTTGGTGTTTCTGATATTGTTGCG AGAATTGTTGAGGATCTCAAAGATGAGAGTGAACCCTATAGGCGTATGGTTATGGAAACTATTGAGAAGGTGGTCACTAACTTGGGAGCTTCTGATATAG ATTCCCGGTTGGAAGAGCTTCTGATTGATGGTATTCTTTATGCCTTCCAAGAGCAGACAAGTGATGATGCTAATGTGATGCTTAATGGGTTTGGAGCAGT TGTCAATTCTCTTGGGCAAAGAGTGAAACCATATCTTCCTCAGATTTGTGGTACTATCAAGTGGCGGTTAAATAACAAGAGTGCAAAGGTGAGACAGCAA GCAGCTGACCTTATTTCAAGGATTGCTGTTGTCATGAAGCAGTGTCATGAGGAACAACTGATGGGTCACCTTGGTGTTGTCTTATACGAGTATTTGGGAG AAGAGTATCCTGAAGTTTTGGGCTCAATTCTTGGAGCTCTCAAGTCCATTGTCAATGTTATTGGTATGACAAAGATGACTCCTCCTATTAAGGATTTGCT TCCCAGGTTAACACCCATTTTGAAGAATAGGCATGAGAAGGTCCAGGAGAACTGTATTGACCTTGTTGGTAGAATTGCTGATCGTGGTGCTGAGTTTGTA CCAGCAAGAGAGTGGATGAGAATCTGTTTTGAGCTTCTTGAGATGCTTAAGGCACACAAGAAGGGAATTCGTAGAGCCACAGTTAACACTTTCGGGTATA TTGCGAAAGCTATTGGACCACAGGATGTGTTAGCAACTCTACTGAATAATCTCAAAGTGCAGGAGAGGCAGAACCGTGTCTGCACTACGGTAGCCATTGC AATAGTGGCGGAAACATGTTCACCCTTCACAGTTTTGCCAGCTTTGATGAATGAGTACCGTGTGCCGGAGCTTAATGTGCAAAATGGTGTCCTGAAGTCT CTCTCTTTTCTCTTTGAGTACATTGGTGAAATGGGAAAGGATTACATCTACGCAGTGACTCCCTTGCTTGAGGATGCTCTTATGGACAGGGATTTGGTTC ATAGGCAGACCGCGGCTTCTGCTGTGAAGCACATGGCACTAGGAGTGGCTGGTTTGGGTTGTGAGGATGCACTGGTACATTTGCTGAACTTTGTCTGGCC TAACATATTTGAAACTTCTCCTCATGTGATCAATGCTGTGATGGAAGCCATTGAAGGAATGAGGGTTGCGTTGGGTGCTGCTGTTGTTCTTAACTACTGT CTCCAAGGGCTGTTCCACCCGGCTCGAAAAGTTAGGGAAGTGTACTGGAAGATCTATAACTCACTGTATATTGGTGCTCAGGATGCTCTTGTTGCTGCAT ACCCTGCTCTGGAGGATGAGCAAAGCAATGTCTACAGTAGACCAGAGTTGATGATGTTCATTTAGATTGCAGTTTAGGCTGTTGGGAACTGTCTTTAAGA CATTTTGCAGTTGTTGGCGATGTCCATATTTGCAATAACTTATCACTTAAAACTATCATGATCTCATAATGCTACGTTGTATGTTCATTAAAACTGGCCC ATACTATAGCTCAGTGTGCATGACTGGGATTCCTTATTATCTGATGAGTTGTTATTTGTTTATTTTGTGTATGATGTGGTCATTATATCTAATAGCACCT TTGGTTTGACAGAAAGGAATAAGACTTCTTATTCCCTCTTTGGTTGAGAATTAAGACAGGCAGTTCCCTAATTTGGAGGGGTTGGCACTACATAACAAAA CTACAGAGTAGTGCCTTTCCTGGTCATAGCTCTCCTCCAGCCACATATTCTCTGCCTATAGGCAAAGAGAATGAGGGCATTTAGAGTTTTACTACTTACT GATTGTACACCATTACTGGAGATCCTGTTGAGGAACTGCTTCAAAATAAGAAAGTAGTTTTGCAAACTCATGCTCTCAACTCTCAAATGGTGTTTCACCA ACTATAATGTTCATGGCTAGCTTTCAATAATTGGAATAAGATCCCGTTTTATGAGTGTTTTTAACTGTAAATTTGACTCAAGTAATATAGATTGATATGG TTTGATTATAATTTAGATTTATCATTTGCATATTACAAGTAAAAA
• Tissue: pods
• Gene name: LI_gene_147712;
• Additional information: details;

Expression of Ll_transcript_513667

FPKM

• PAB: 8.6
• PNAB: 27.4
• PS1: 33.7
• PS2: 24.4
• PS3: 32.6
• PW1: 25.4
• PW2: 19.4
• PW3: 19.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_513667

• Blastp: Splicing factor 3B subunit 1 from Xenopus with 69.51% of identity
• Blastx: Splicing factor 3B subunit 1 from Xenopus with 68.7% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (399336)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440342.1)
• Pfam: Splicing factor 3B subunit 1 (PF08920.9)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;