| Id Trinity | TRINITY_DN46892_c2_g1_i21 |
|---|---|
| Name Transcript | Ll_transcript_512225 |
| Sequence | AAAACCTTCTACCCCTCTATTTTCTCCTTTTTCTTTACCATCAGAGATTGACCCAAACGTGAAAACTTTGCGTACCTCAATTTTCTTGTTTCACAATTTC AAAGCACAAAACAAAACCCTAAGGGACACAGTAGATTTGGATTCAAATCCTCTCTCTTATTCGATTCGCGTCATTTTCGTGCCTCTACCTATAAGATATG ATGGAGAATTCAATCGGAAAATCAAGTCCCAGTGTTGATGCTGCAATTCGTTCTTCACAGTCTCCTAAACAAGAGGGCAAGAGGGAGGCTGAGGATGATC TCGAGAAGTTAGTCTTTTCAAAGAAGCAGAAGAGAGATGAGGTTGCTGAGAACCAAAAGAACATGAGCGAAATTAGGTTAGATGATTCCTCATCATATTC TGAACAAGATCAGGATCAGAAGTCTGCTAAAAATGGTAAACTGGAGAATGAAGACAATCCAGCTACCAGTTCCAATTCTTCTGAATACTCAGGCGGTGAT TCTGATGAGGATAAAGCGGTAATGGATATTGATCTGGGTGATAATTCTGAAGAAAGGGACGTAGAGACAAAGAAGAAAAAGATGAAAACCTTGCAATGTA CTGCATTAAATGCTCAAAAACATGATTCAAAGACTGTTGTAAGGGATACTTCTAGTGATATATCAGATGGTGATGATGATAATGAAGACAATGATGATGA TGATAGTAGAAATTCACACATGGTTAAAAAACCTGTGAAAGATTCTGAGAAATTGGATGAAAATGATGAAGAAATTGAGGAAAAATCCTCTAGAATTCTT GAGGAAAGACCTAGAACTCCAGCTACACTAAAAGTACAAAATGCAACATCAAAAAGAATATGTGTTAGAAACTTGTCATATAGTGTGGAGCGGGCTGATA TGTATGTACTATTTCTCTTGCTTGTGCTTATCAATTGTTTTCTGTATAATTTTTCTCATTGCAAAATTGCTTAGGGAAAATCTGTTCAAAGAGTGTGGAG AAATTGTTGATGTCCGTTTCATTACAGACAGTGAGGGGAGGTTTAAAGGCTTTGGGTATATTTCGTTTGCAACAGAAGAAGCAGCTCTGAAAGTAAGCTT TTTGTGACCTTGTTTAGTCTGTGCAAATCATTTTAGAACAGGCAAATCATTTTAGAACAGGCAAATACATTTCAAAGATAGTTGTATCTTTGGAAGGTAC AATGGTGCACAATTAAAATCAAACTAACTATTTGATTTTCTTGAAATATTTTTATTGTTACCAGTATTCTCAGTCTGCATTTGATTCCTAAAGCAAGTTG CTATCCTGTACTTATTTTATTATTGTTGATAGTGCTGCTAACTACAATTTTGACCAGGGTGGTATCAGTTAAGTGGTTGCTATTAAGAAGTATGTTAATG TCTATTGTAGAATAGTTACTTTATTCTTTATTATTCAAGTCAAGCCAAATAGGCCCTACTCCCTAGGCTACACGTGTGACACTCTTGTAGCACTGTATCC TCTATTGTCTTGTACTCTTTTGACTAATGAATAACGGAGACACGAATTTGAAAACATGGTGTCAGAGCCTATTATGATGTTAGGCCAGACGCATATTTTC GTTCTTGCAAACTTCATGCTCCATATGTTCCCACATCAATTAAACATATGAATAATGAAGCATTTATAATGACTTAGGAAATCCTCCCTCCATTAGGTAG ATTTTGGGCTGAAATCAGGTCCAATTATTCTAACATGGTATCAAAGCTTGTGAAGAAGATGGGATAGAAATTGGAACACTCTGTTCATGCATAGCTGATT TCAAGCTAATTATGGCAATTTGAATTGCCCCAACTACCTTGTAAGAGATAGGTCAGAGACATAGTTACCCCTATACTTTGTAAGCTTGCAACAACAAACC ATAGATGTAGAAATGACTTCACATCAGCCTTGTGAGTTCTAGTTAAGAGGTCCTTGATGTACTTGCCTTGAGAGAGAACCATCGGCGAGGTGTGTGATCT CTATACCAAGAAAATAATCCAAGTCACCAAACTGCTTAAGGTTAAAAACTAAGTTGAGTTTGGTGATGCAAACTTGAATTAGGTGTGGGGAGGTGCTTGT TGGGCATAGAGCTTTTGGAAGAGGATGGCTGGATGAAGAGGGATGGGGCACAGTTGCTGCAGTGGAAACCTAAGTCAAGTAGAGCCATATTTAGTTTCTC TGCTTAACAATCATTGTTTTTAAACGATGGAGGGCTGACATTGATATGCCTCGTTTTTTCTTTTATATTTGTATGCCTAATGCTTGTGTTGCTATACTCT TGTCTGTTAAACCCTTTACTTTCCAAAGACATATTGAGCTCAGAATCAATTTGCTTTTGTAATCATAGGCCCTCAAGTTGGATAATACAGAACTGTTGAG ACATCCCATTAAAATTGTTATAGCTCGGGAAAGGAATAAATATACTCCCTTTAGCAGTAATTTTAGCAACTTTGGCGAAACATTCCAGTCGGGTGCAAGT GTTCGGTTGAAAACAGTATTTGTTGCAGGTTTTAATAAATCTCTCACTGAAGAGAAGATAAAAACTAGCTTGGAAGAGCATTTCAGTTCTTGTGGAGAGA TTACAAGGATATCAATTCCAAAATTTCCTGATTCTGTGTCTGTTAAGGGGTATACTTCTTTTCATTCTTCTGTATGCTAGGTCTAATGTACTAAAGAATA TTTCAACATGCCACAGCCATTTACCTGCATGCCTTTTCATATCTCACGTTCCCTTCGACATTATGTCAAAGAGTTTGTAAAGGTTGCACTATATGAGCAT GAGTGCTCAAAATGTTCTTTGTGAATCTGATCTGGCAAAAATTGTTCCTGTGCATCTTCCACTTAGATCATTCTGTAGTCTGCATTCTAAAATTGAATGA CAGTAAGCTGCGCTATGATCTAATCAAATTCACCTGAAACAGTTGAAACCTAAGTGAAGGCACCCTAAGGCGTTTTTGAAATGTGTCAAATAGCTCACAC CTTAATATGAGGCATTAATGTTAGAAAAAGAACAAAACAATATGATTATAATGCATTGGTTCTTTTTGTAAGTTTAATGCCCTAAGCTATTTGTTGCTAA GAGTCCTAAAAACAACAACTATTTATTTGAGACTGACTATTTTACCTTCTTTAGCATAATCATTAGCAAGTTGTGTTTCAGAAATTATTTACCATTTGAA GAAGACACTCCTAAGGGTTAGTTTGGGAGTTGGATTTTGGAGGGGAAAGAAGGGAAAGGGAAGGCTTGAGAGTCATCTCATAAGTGTATTTCATGGCTCC CAAACCTTCCATTTTCCTCCCTTCTCCTCCAAAATTCAACTCCCAAACAAGCCCTAAGGTACCTGCAAATGAAGTTAGACCTATATGAGAAGCTGATTTA GTTGAGCATCCAAGCATCAGGTTTTGTACAAGTAATAATATCAGCTTTCAAGATGCTTATTAGGCTAGGTAGTCAGCATTCTAGTTGAGAAACAAGAGAT GAAGAAAAGAAACTATTTACAATCTATTTTCTGCCTGAATCAAAGTATAAGGGACACAATTTTGTAAATAAATTTATCATTAACTTGCAAAACTAAAGTG ATAGAGGAATATAAATGTTTCAGTACTGCAATGATTTATAATCACATGGCATTCCACTGCTCCTTCCTAACTAAATACACCATTGCATACAGTACTTATT GTTATTTCCATATGCTCATTTCCATTATTTGAACATCTGTGTGGAGCATGATTGTAACTCCATTTCACAGTTTCCGTGTGTTATTGCTTGTCCTCCATGT ATACATTTTGATGTCATTTTCTCTGATGTTGGCTCATGCCAAACTTTAATTGACTTACACTGTTTATCTGTCAAAATTATGCCTCCTATTCCATTTTCAT AAAAAAGTCTGACCCTGATATTATGACTACAGAATTGAACCAACATGGTGGGTTTGTAGAGGGAGAAAATAGAGACCCGGCTTCTGCTGGTACGCCTGAC ACAAAATATGGAGGAGTACTGTCGAAAAATCCTGCAGATAATGTGGTTGCATCAGTTATTCCAGTTGCTCATTCTGACGTGTATCATATTGGTGTTCCTT CGCAAAGGCCTTCCGTTTCGATTCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATAAGTAGGATATATGGTGATTGGATTGA TGA BLAST |
| Tissue | pods |
| Gene name | LI_gene_147997; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_512225
| Blastp | - |
|---|---|
| Blastx | Zinc finger CCCH domain-containing protein 56 from Oryza sativa with 47.01% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461656.1) |
| Pfam | - |
| Rfam | - |
| GO | - |