| Id Trinity | TRINITY_DN46899_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_513158 |
| Sequence | GGTCGCGGTGACAGAGGCCGTGGCGGCCGCCGCAGAGGTCCCCGCCGCGAAGAGGAAGAAAAATGGGTCCCAGTCACACTCACACACACTCACTCATCCA ACATGGCAGAACGTGGTGGCGGAGACCGTGGCGGCTTCGGCCGAGGCTTCGGCGACAGAGGTCGTGGAGGTCGCGGTGACAGAGGCCGTGGCGGCCGCCG CAGAGGTCCCCGCCGCGAAGAGGAAGAAAAATGGGTCCCAGTCACGAAACTCGGCCGTCTCGTAAAAGACGGTAAAATCCGTTCCCTAGAACAGATCTAC CTTCACTCTCTCCCAATCAAAGAACACCAAATCATCGACACCCTTGTGGGACCCTCCCTCAAAGACGAAGTCATGAAAATCATGCCGGTTCAGAAACAAA CCCGGGCCGGTCAGCGAACCCGGTTCAAGGCCTTTGTTGTTGTCGGTGACAATAACGGCCACGTTGGGCTCGGTGTTAAGTGCAGCAAGGAGGTTGCCAC CGCGATTCGCGGCGCGATAATTCTCGCGAAGCTTTCTGTTATTCCAGTGAGGAGAGGGTATTGGGGAAATAAGATTGGGAAGCCTCACACTGTTCCGTGT AAGGTTACTGGGAAGTGTGGTTCTGTTACTGTGAGGATGGTTCCTGCACCTCGTGGTTCGGGGATTGTTGCTGCTAGGGTTCCTAAGAAGGTGCTTCAAT TTGCTGGGATTGATGATGTTTTTACTTCATCTAGGGGATCTACTAAGACACTTGGAAATTTCGTCAAGGTATAATTTTTTTCATACTTTCACTCTTTTAT CATGTCAAATTTTATTTTGTAATTTATGGTTATTTGATTGATTTTAATTTCAATGTTTTACTTGAGTTGTAAATTTTACGACTTTGTGATAATTCAGTTT TTAATGAGATTGTTATAATGATTTATATGACTGATGAATTATTATTATGTTTAGAACTGATTTATTGCTACGTGCTGATATAATTCTATAATTTTGTTTG AGGTACTAAGTATCTGTGTTTCTGAAATGCTGTTTATTGAATATTGAGTTACATGAATTATTTTGAAGTAGATCTCTTTGTATTTTTAACTTGGCATTAA TATACATGTGTATGTATGTTATCTCATTGGATGCACATGCTGCTCTTATTTTATTTGACACTAGTTTTTGGATCCTGCATATTTTCGAGTTTGTTATGTG ACTAGTGAATGATTTATTATGTCATTTGGTGTCTGCTAATGTGTTTGATGGTATCTCATCAAGTTTTTGTTTTTAGTCTATGACTGTAGGAATTGACAAT GAAGTATATCCTTTGCACAATATTAGGATTGAATTGTATGCAAAATAATTGGGATGTGTTAATGATAATTCACATTTTGAATTAATTAATCAACTATTGT TGGATACACATTAAATTTGTCATCCATTTAAACTTGTCAATAATGCTGTTCTTTTACAGGCTACCTTCGACTGTCTGCTGAAAACCTATGGTTTCCTTAC ACCCGAGTTCTGGAAGGAGACTCGCTTCTCGAAATCTCCATTCCAAGAGTACACAGATCTTTTGGCAAGGCCAACAACAAAGGCTTTGATCCTTGAGTCA GAGGAAAAGGTTGCTGAAGCTTGATCTAGTACTCTGTTGATGTTATGGGATTATCATGTGTCTTGAGCAAATATGCTAGAAACTAGTATTTAAATGTTTT GTTGCTTAATGTTTTTTGCTTCATAACTTTATGGAATGTTATTCTTAAGTTTTGTTGATTGAATATTTACCGAGTTTTAAATACTATAATTTTCTACCTT GAGCATTTCATTGCTTTACCTGATTGATTAATGCAATAATTTGGAGTAAAATCAACATTCTTATGCATGATGAATTAAATGCAATAAGTACCTTATGGAT TTTATGCAGTTATGTGCTGATTCTCCTTGCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_148084; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_513158
| Blastp | 40S ribosomal protein S2-4 from Arabidopsis with 93.99% of identity |
|---|---|
| Blastx | 40S ribosomal protein S2-4 from Arabidopsis with 93.01% of identity |
| Eggnog | Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body (By similarity)(COG0098) |
| Kegg | Link to kegg annotations (AT3G57490) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019424308.1) |
| Pfam | Ribosomal protein S5, N-terminal domain (PF00333.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |