Ll_transcript_314050

• Id Trinity: TRINITY_DN46915_c1_g2_i12
• Name Transcript: Ll_transcript_314050
• Sequence: GTAACTCCTGAGCAAACGTTGGTTCTTGTTCTTCTTTTTCGTCTCTCGCTCTCGGACCCCACTTTCTAAGAACCCATTGGTTTTTTGATTTCGTAAGAGG ACATGGTTAAGCGGAAGCAGCAGAAGAAGCAATCACACAAGAAGCAAGAACAACCGCAAAATAAGAAGCAAGGAAAACAGGATGATGCTTCACAATTTTG GACTCAGTTGGATGTTCTGGGCCTACGCATTGTTGAAGTGACAGCAGATGGCAATTGTTTCTTCAGAGCCCTTGCTGATCAGTTGGAGGGCAATGAGGAG GAACATCGAAAGTACCGCAGCATGATAGTGAAACACATATTGCTGTTTTTAACAGGACAACCGAGAAATGTTTGAGCCCTTTATTGAAGACGAAGTCCCA TTCGATGAATATTGCCGATCCATGGAAACTGGTGGTACATGGGCTGGACATATGGAATTGCAGGCAGCTTCTCTAGTAACACATAGTAATATATGCATTC ACCGGGTAAGTAATGTACCTGAAGATAATTAATTGTGTTCTCTTATATTCTAACGTGGATTTATTTTATATTTGCTAGCTAATTCATACTGTTACCTAAA GGTATATTAAGACATGTCTTAAGTGGATGTTTTTCCACATTATATCACCTTTGTCCCATGCATTTTTTTAAATGTGTTTAATCTTCATTTATTAATAATG ATGACTAACATTTGTGCAGACACAGACAAGTATTTCTAACTTTTTGGTAGATTTTGCATAACAATGCACCCTAAAGTTAATTGCGATTCACATGCTAATT GGTTTGCTATTGCAGAGCATGACTCCTCGCTGGTACATAAGAAATTTTGATGATCGTGGAGCTCGTATGATCCATTTGTAAGTACTATGGAGTTTATGAT TGTTATGTGAAATTGCACTGCACACTATTTTATCCAAGGCTTTGAGCAGTATATCGATCTTTTTGAAATGCTATATCTATGACTAAGGAAGAAGTAAATA GTTTATGTCTTCAGCTTGCTGGCAGACTCTGGGTCTTAATACCTTAGAATCACATGACCACTGGAAAAAGTTACATTCATTTATCTTCTAATCTTGTCAA TTCAAATAAAATCCAATGGTTTAGATCCTCACCTTTGACAATAACAAGGTGTTCTAAGCTGATATAGTCCCTATACATAAAGGCACACACACACAAACAC ATAGAATAGTAGAGTAATAGTGTATGCTGGTCATGTAGATCAAGGTACGGTGAATTATAATTGGGTGGTGATATAGTTTTATCGCACGATTCATATTGCG AATTGATGCAGCTTTCATCCCCAACAATGCAAATCACAATTCTTATGTGTCTAAAACAGGCAGGTTTCCTGGAAACCCTAGAAAGATGATTTTTTTCTTC TTGTTTTTTTAAAACCCACTTCAGATGGTCTGATTTTACCATTCAGAATGGGCCCAAACCTAATTTCTTACCCTTTGCTCATTTAACATCTGAATTTACT TCTCCCACTTGTAAAAACTATGACGTGAGTATCATCTTCGGTCACTGCCATTTCTTTGTTTTAGCCTACATCTTCTTTATTCCTTTTGTTGTTGTTTCAA CATATTAATTAAGATGAGTCTTATGACTTGAATTTGTGTTTTTTACTGTATGTTTGTTGTTATGAGTCTTATGACTCTTATTTAAGTACTTTTAATTATT GATCATGAATCTTACGGTTCACAATATGATTCCATACATGATTAAGAAAACAGGCCTTCCGATTCATAATCTGAATCCCGTTTCGACTACCATGATATAA TGCAGTTGGGTTATTTGGAAGGAAAATTGATAAAATAAAGGAGCAAACATCCATTCAGCTTTTGTGAATGGAAAAATCTTGTTTATTAATCATTCCAAGG ACCTAGAACCTATGTTTAATTATTTTTGTGATCCTATTTGTATGTGGCTGGAGTAGTATGTACCTCACAGTTTCCTATTAGGTGAATCAGAACATCTTAT CATTTTAGGGAAGACAACCCCTGTAATTTTGTTCTGTGTGCAAGTGTGCAATAGATCTATTTAAACATGAAATTAAAATTTAAGATGCACACAACAATCA GTATTTTCTCTGGTGGATGGCATTGAGGACTTGCGGTGAACTATATATTGTCCTGCGTGCAATATATTGCGAATTTGTGACAAAGATGGGTGGTGCACAA AGAAGGAACAACATATGCATGAAATTGTCAGAAGATAGTATTTCTAACACAATTGTTGAAACTTGTTTAAGAGTAGTAGTACCCATAAACTATGAGGGTG GATGAGATTTCTCACCTTCAAACCCCCATTTCACTCATGGTGCTGCCAAGGCACCATTTGTGTGATGGCTGCCATTACAAAGCTGCCATACTTCAACATT CATACGAAAGGTTTCAGAAAGTCTGCCATGCCGTACGACCATGGCCGTCATTTTATATGAACTTTATTTGTTTATGTTTGGGTATATATGTTTTTCCAGG TCTTATCATGATGGGGAGCATTATAATAGCGTGCGGTTAAAGGATGATCCTTGTGACGGGCCTGCAAAGTCAATTGTAATTAAGGTTCTTATTCGAATTT TGTCCTGAATCTCAAATTAATGTTAATAATAGTAGCCACCACCTGATTAGTTCTAGTTTGTGAAAGGCTGATGCTGATCTTTCAGCGACATCACATCAAG CAAAAGTTACAGCTAACAAATCCCGTGAGCGGACTGATAAAGGAACTTGTCTGCCAGGGTCCATAAAGTTGGTTATGGCTGGAAGTGGATGTGAAAACAC TGAAAAAGTCGAACAGATTCTAGAGCAGGTAAATGGAAATGTTGACGCTGCAATAGAGTTTCTTATAGCAGAACAAGGAAGAGAAGAGTGCTCTGCAACA TCTGATTTCTTTCCGAGTCAGGCTGATGCTGATGGACATGATGAAAATGAGAATCTCGAACACAAAGAACACACAGTAGAGGACAGCGTTAATGCCAAAT CAAATGATAGGTCCACGAAGACCAATAACAATAGCACATTGCAACCAACCGACAAGATTCCCAGAAACAAGTTCTGCCCATGTGGTTCAAAAAAGAAATA CAAAGCTTGTTGTGGATCTGTCTTGGGAAAACAACATGCTAAGCTTGTAATTAACCAAGCAGATGACTCCAGAAAGGGCAAAAAAGAGAGGAAGCAAGGA AAGAAAGGGATTTCCTCAAAAGCTGAAGCCCCATATGAATATGACTCGGTGACACTTGACGTGGGCGCACTTTGTATTTGAATTGATTATAAACAAGTTA ATTGTGTGCTCCCCCTGAGAGAGAAACTACTTTTAGGCCAATTTGCTTTTGGCACAAGGAAAATTTGGAACAGCAAAAACATAGACAAAAGAAGAAATAG TGGTTTAAAATCATTTTTAGTCTTTCTAGTTGAAGCAAGAAGATGCATTTGTGAAGAATGTGCAAGTTTTGATTAATTTTTATGTGATGTCATGAGTGAG AATCTGTGTTGCACAAAATATAAAGGTGGAATACATATTGATAGTGATTTATGATTACAAAAGAGTAGCTCAATAATCAATTACAAAGTTAAGCTAACCG A
• Tissue: pods
• Gene name: LI_gene_148233;
• Additional information: details;

Expression of Ll_transcript_314050

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.2
• PS2: 0.2
• PS3: 0.2
• PW1: 0
• PW2: 0.1
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_314050

• Blastp: Protein translocase subunit SecA from Thiomicrospira with 40.82% of identity
• Blastx: OTU domain-containing protein 3 from Mus with 51.02% of identity
• Eggnog: Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving(COG0653)
• Kegg: Link to kegg annotations (Tcr_0589)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019422192.1)
• Pfam: SEC-C motif (PF02810.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;