Ll_transcript_313848

• Id Trinity: TRINITY_DN46929_c0_g3_i2
• Name Transcript: Ll_transcript_313848
• Sequence: AAGAGATTTAACAGATGAGGTGAAATCACGATTTTGGATTTAGATTTGTACTCAAATTCGCAGGTTAATTTTGTTTTGTTCTACCGAAATCCTATACAAA TCCACAAGTGTGGTTTTGTGTCTTCTTCTTCAGATTCATTGATTCATCAAAAAGCAGAGAAAGATAGAAAGGGTGTGTTGCCATGGCAGATGAAGGAGAG TTACCTGAAGGAACGTTGCAGAACATTCTAGAACAAGATTCTCTGAAATGGGTTTTCGTTGGAGGCAAAGGTGGTGTTGGAAAAACCACTTGCAGTTCCA TTCTCTCTATTCTTCTCGCTACTGTTCGAAGCTCTGTTCTTATTATCTCCACTGACCCTGCTCATAATCTCAGTGATGCTTTTCAACAACGCTTCACCAA AACCCCCACTTTGGTTAATGGCTTCTCCAATCTCTATGCCATGGAGGTGGATCCGACCGTTGAACACGAGGAGATGGCTGATGGGATGGATAGTTTGTTC TCTGAGTTGGCTGGTGCAATTCCTGGAATTGACGAGGCCATGAGTTTTGCTGAGATGTTGAAATTGGTGCAGACAATGGATTATTCTGTTATAGTATTTG ATACTGCTCCCACTGGCCATACACTCAGATTATTGCAATTCCCATCAGTTTTAGAAAAGGGTCTTGCAAAAGTAATGTCTTTGAAAAGTAAATTTGGTGG TTTGTTTAATCAGATGACTCGCATGTTTGGCATGGGTGATGATTTTGGTGAAGATGCAATTGTTGGGAGGCTTGAAGGCATGAAGCATGTCATTGAACAA GTTAATAAGCAATTTAAAGATCCGGACATGACAACCTTTGTCTGTGTTTGCATACCGGAATTCCTTTCACTTTATGAAACTGAGAGATTGGTTCAGGAAC TTACAAAGTTTGAGATTGATACACACAATATCATCATTAATCAAGTACTCTTTGATGATGAAGATGTTGAATCCAAGTTACTTAAAGCAAGAATGAAAAT GCAACAGAAGTATCTGGACCAGTTTTACATGTTGTATGATGACTTTCATATTACCAAGCTGCCATTGCTCCCGGAAGAGGTAACTGGGGTTGAAGCTCTG AAATCATTTTCAAGACATTTTAAGACACCATATCAACCCTTGTGTAGTAGAGATCAAGTAGAGCGGTTAGAGCATAGAGTATCAGCACTAAAGCAGCAGT TAAAAGATGCTGAAGAAGAATTGAAGAGAGTCAAGGCTTGATGAACCTCCATTCATGAATAATGACATTTTTGAAGTTTATTACTTGATAAAGCATCCTC TTCTGTATTGGGCTGCAATCAATTCCATGTTTTGCTTCTAATCTTAATTAGTGTTATAAACAGTTTTGTCATGTAAACCAAAAAAGAAAAGAAAAGTGCT GAGGTTAGTTCAATTTGTTTTATGAATAATCTTGTATCATTCAGATTATGAGTTGGATAATTTTTTATTGGTGTGTTTTTTCCTTGTTTTATTTTCAACT TTCTGAGTGAAGGTGGCATGATAATGTTATTTCCCTTTGTGCT
• Tissue: pods
• Gene name: LI_gene_148333;
• Additional information: details;

Expression of Ll_transcript_313848

FPKM

• PAB: 5.7
• PNAB: 14.2
• PS1: 9
• PS2: 9.1
• PS3: 11.1
• PW1: 9
• PW2: 9.9
• PW3: 6.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_313848

• Blastp: ATPase ASNA1 homolog from Anopheles with 59.82% of identity
• Blastx: ATPase ASNA1 homolog from Anopheles with 59.82% of identity
• Eggnog: ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail- anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting (By similarity)(COG0003)
• Kegg: Link to kegg annotations (AgaP_AGAP005782)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431064.1)
• Pfam: Anion-transporting ATPase (PF02374.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;