Ll_transcript_314271

• Id Trinity: TRINITY_DN46964_c5_g2_i2
• Name Transcript: Ll_transcript_314271
• Sequence: CTAGAAAGCAGGTAATTAATTCTTTCATGGATTCCTAATCACCATTTTCTGATGATTTTGACCTCATACTCATTCTATAATATTTAATTCAGTGTTACAG TATTATCCAAAATATAGATTGAAGAGAGTATTTTTTATTGTCAATTACTTTGTGGATGTAGAATCACAAGTATCATGATGGGAACCTCAATCCTAGTGGT TGGTCAACATTTCAAATTTTCAATGTGTATTCTTAGATAGACAGAAATAAAATGTATTAATTTGGGTAGTTACCAACTGTAGGGGCTATTATATGTAGGT TATGCATTGTAACTTGAATAGTTATCAATTGTATGGGTAGTTAGTGTATCACTAGGAAGTGAGGGTAAGGGGAGCTATTCATTGGGCATTTTCAGATGTG CTAGTGTTTGGGCAAAGAAGAAATTCTTGAAGGAGCACTGCTCTGGGGCAAGAGTCAATCTCTTGTATTTGTGTATATCTATACTATTAAATTATCATAT TTCATCTTATAATTCTGGGCATCTATCATATCATCTCCTCCTTTGAAAAAAGAAGCGAAGGTTGAAAATTGAATTTTGATGCATCCATGAGCAACTGTAG TTTGCAAGAAAGAACTTCTAATTAAGTAATTTTTTATTAATAGATTATGATTAGTATCTTTTTACTGCCCAAGGGGAAATGCTCAGATTGTTCCAGAATT TCCAACCAAACTTGATTGGCTGAATACAGCTCCGCTTCAGTTTGGCAGGGACCTAAAAGGAAAAGTTGTTCTGCTGGATTTCTGGACTTATTGTTGTATA AACTGTATGCATGTGTTGCCTGACCTAGACTTTTTGGAGAAAAAATACAAAGATATGCCGTTCGTCGTTGTGGGTGTTCACTCTGCAAAATTTGATAATG AGAAAGATTCTGAAGCTATTCGCAATGCAGTTTTACGCTATGACATTACTCACCCTGTAAGCTTGAAGTTGGACTTCAATTGATGTTTCTAAGCATTTTT TTCTGGACACTTTAACATGGGTTGTCAATGATGGAGACATGTACCTTTGGCGGCAGTTGGGCATAAATTCATGGCCAACGTTTGCTATAATTGGCCCAAA TGGTAAGCTCCTTGCACAACTTGCAGGAGAAGGTCGTAAGAAGGATCTTGATGATTTTGTGGAGGCAGCACTTCTGTTTTATGGAAAACAGAACATGTTG GACAACACACCAATTACATTGAATTTGGAGAAAGACAATGATCCTCGCCTATTGACATCCCCATTGAAGTTTCCTGGCAAGCTAGCTGTTGATGTCCTCA ATAATAGGCTTTTCATTTCGGACAGCAACCATAACCGCATAGTTGTTACTGACCTCAATGGGAATTTTGTTGTACAAATTGGGAGCAGCGGGGAGGAAGG TTTGCAGGATGGCTCCTTTGATGATGCCAACTTCAACCGTCCTCAGGGCCTTGCTTATAATCCAAAGAAAAATATCCTTTATGTCGCAGACACCGAAAAC CATGCTTTAAGGGAAATTGATTTTGTTGATGAGAAAGTGCGTACTCTTGCTGGAAATGGGACAAAGGGATCTGATTATATTGGAGGAGGAAAAGGAGACA CACAGCTTCTTAATTCCCCTTGGGATGTATGCTTTCATCCAATTGAAGAAAAAGTTTATATTGCTATGGCTGGCCAACATCAGATTTGGGAGCACAATAT ATTGGATGGAATTACAAGGGCATTTAGTGGAGATGGTTATGAAAGAAATTTAAATGGATCAAGTTCTACAAGCACATCATTTGCACAACCTTCTGGTCTT TCATTGTCTCAAGATCTAGCGGAGATCTACATAGCTGATAGTGAGAGTAGTTCCATTCGAGCTGTTAATCTGAAAACTGGAGGATCTCGGTTGCTAGCTG GTGGTGACCCAATTTTCTCAGACAACTTGTTTAAGTTTGGTGACCAAGATGGAATAGGCTCTGAAGTACTTTTTCAACATCCATTAGGGGTTGTGTCTGC AAAGGATGGTGAAATTTATATCACAGATAGCTACAATCACAAGATCAAGAAGTTTGACCCAACTAGTAAAAGAGTTAGCACCATTGCAGGGACAGGAAAA GCTGGTTTCAAGGATGGGACAGCTGTGACAGCTCAGCTTTCTGAACCATCAGGAATTGTTGAAGGGGACAATGGGAGACTATTCATAGCCGATACAAACA ACAGTTTAATTCGATATCTAGATTTGAACAATGATGAATATGCACTCAGTACCTTAGAGCTTAAAGGTTTTCAGCCTCCTAAACCCAAATTGAGATCTTT TAAACGTCTCAGGAGACGAACATCAGCTGACACAGAAACCATTAACATTGATGCCATTTCATCCAATGAGGGAAACTTGTCTATTGAAATATCATTACCA AATGAGTATCATTTCTCGAAGGAAGCACGCAGTAGATTTAGTGTTGATATTGAGCCTGAAGATGCTGTGAATATTGATCCACTAGATGGATTCCTTAATC CAGAAGGATCTGCAACCCTTCACTTTAAGAGATCCTCTAACTCTGCTTCAGTGGCAAGAATTAATATTAAGGTTTACTATTGCAAGGAAGATGAGGTTTG TTTGTACCAATCATTGCTGTTTGAGGTCCCTTTCCGAGACGGAGCTCCTAACTCTACCAAAGCGGATGTCACCCTTGCACATTTTGTGAAGCCCAAAACT TCAACCAGCAGCTCACTGCAGTCAGTTGGCATGTGATACTGTAAACCAGGTTTTATTTGAGCACCCTTTCTATTTCTTGCTCATTTTTGCAACAGATAAT GGCTCCTGTTAATCAGTACTAAAAAGTATTTATTGGGAAACTTCCCAGAACACATTCCAAGAACAACTTACTTCTTTTCATTCCATAAGTTAGCATATAT AGAAAATAAGAATAGGACATAGTATGGAATTATAAATTCTCAGTAAGGGTAAAATAAGGCAATTAGTAGAAGGGTTATACTTATACTAATATTGATCGAT AGTGTAGAGCATTAGTTTCACCAAATCACAAGTTAGACCTCTGGCTAACAAATGTGTTGTAGTTTGGTGCAAAGCACGAACTTAGTGGGTTTATTCCTAT GCTTGGTCATCATATATATTGACAGGCAAGAAAATGGTTTGCTTATGCAGATTTATAATAAATAATAATTACATGTAAAATTTAATTTAATTCACCGCAT TCTAGTTGGAAACTATTTGCGGATCAAAAGAAAGGTGGGTAACCTTTTGGTTAACTAATCCAGATTAAGATGCAGAGTCAATAACCTTTTTGTATCCAAT TGTGCTTCCTCTTTGGGTATTCTGAGAAGAGTCATGGCAAATGAATTTCTGCACCATTGTCATGGTCAAACATTCATAATCATGTGACAAAAACCTTACA TTAGTCCATCAAATATGTGTCCATTTTCAGTTTGTTCAGATGAATCTTCGCAATGCTCTTTGTTGATTAAAATCAGTATCAAATTAATCCAAATGTAAAC TTAAGGCAATTTCCAGTTATAAAAGGAATTTTTTTCATGATACAAATGAAAGGATTA
• Tissue: pods
• Gene name: LI_gene_148628;
• Additional information: details;

Expression of Ll_transcript_314271

FPKM

• PAB: 1
• PNAB: 0.5
• PS1: 0.2
• PS2: 0.3
• PS3: 0.5
• PW1: 0.3
• PW2: 0.4
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_314271

• Blastp: Protein SUPPRESSOR OF QUENCHING 1, chloroplastic from Arabidopsis with 71.33% of identity
• Blastx: Protein SUPPRESSOR OF QUENCHING 1, chloroplastic from Arabidopsis with 71.63% of identity
• Eggnog: HAD-superfamily hydrolase subfamily IA variant 3(COG0637)
• Kegg: Link to kegg annotations (AT1G56500)
• CantataDB: Link to cantataDB annotations (CNT0001568)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019422591.1)
• Pfam: NHL repeat (PF01436.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;