| Id Trinity | TRINITY_DN46964_c5_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_314276 |
| Sequence | AGTTCCTACCATTATATTGAGAGAAAAAATAAGTTGGGAGAATTATTTGATGACACTTGAAACATGATTTGGTCATGTGGTCACGAAATAGATAAGGTAC CAAGAGAAGAAGAAAGGTAGAAAGGTCACTAACATCACACGTTGCATGACGACTTAAGCAATTTAATTTACAAATAAAATCTCTCTCCGCCACTCAAAAC TGATTACAGATTATAATCACTTAAATTTTGAAGCAGCTTCATGGCTTTTGAAACTGCTTACTCTTCTCTATCACTTCCAAATTCAACTACCTTCTTACAC TCTTCTTCTTCTTCCAATATCCGAAGACTCAAATCTACTTCGCTTCCTTCTAGATTCTTCTTCAACTTCCAATCGCAACGCATCGTTTTGACGCCGAAAA AGCTTGTGGTGATGAAACCTTGCGCGGTGAGGATTGAAGAGAAGAATAGTAACGTTGCTGGAAGTGAAGGAGGAGAATGGGAGAAGGTTTCTGCGGTGTT GTTTGACATGGACGGTGTGCTTTGTAATAGTGAAGAACCTTCTAGAAGAGCAGCGGTTGATTTGTTCGCCGAGATCGGTGTTCATGTCACCGTCGATGAT TTTGTGCCATTCACGGGAACCGGAGAAGCAAACTTTTTGGGGGGTGTGGCTTCTGTTAAGGGGGTTAAAGGATTTGACATTGAAGCTGCAAAAAAGAGAT TCTTTGAAATATATTTAGACAAGTATGCAAAACCAGATTCTGGAATAGGATTTCCAGGTGCCTTTGAACTCATTTCTCAGTGTAAAAACAAAGGCCTTAA AGTGGCCGTTGCATCTAGTGCTGATCGTATAAAGGTCGATGCAAATCTGGCTGCTGCTGCTTTACCATTGTCAATGTTTGATGTGATTGTGTCTGCTGAT GCTTTTGAAAACTTGAAACCGGCTCCGGATATATTCTTAGCTGCTTCAAGTATTTTAAATGTGCCCCCCGGTGAGTGCGTTGTTATAGAAGATGCGCTAG CTGGAGTGCAAGCTGCCAAAGCTGCCCAAATGAGATGCATAGCTGTCAGGACCACATTATCAGATGAGATTTTAGAATCTGCTGGTCCAATACTTATCCG AGATGACATTGGAAATGTTTCAATCGATGATATTCTGAGTGGTGGCTCTGTTGGATATAATAAGAGTATGCAGGGCTTGGAAACTCTAAACAATTCTTCA CGATCTTCATCTACTGTGCTTCTTGGAAAAACAGATGATGAAGATGGAAAAACTACCGGAGGTACTGATGAGGGAATTTTCTCAATTGAAGGGTTGCAGG GTTCTCGACGAGATATACTGAGATTTGGAAGTCTGGGCATTGCTATCTCTTGCCTAGTCTTCACCTCAAGTAATTGGAAGGCAATGCAATATGCTTCCCC GAAAGCAGTTTGGAATCTCTTCTTTGGTGTTACCAAACCATCTATGGAAGAGAAAGAAGGTAACTCAAGATATGATAGGATTCAGCAATTTGTGAACTAC ATAACTGATCTAGAAAGCAGGGGAAATGCTCAGATTGTTCCAGAATTTCCAACCAAACTTGATTGGCTGAATACAGCTCCGCTTCAGTTTGGCAGGGACC TAAAAGGAAAAGTTGTTCTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCATGTGTTGCCTGACCTAGACTTTTTGGAGAAAAAATACAAAGA TATGCCGTTCGTCGTTGTGGGTGTTCACTCTGCAAAATTTGATAATGAGAAAGATTCTGAAGCTATTCGCAATGCAGTTTTACGCTATGACATTACTCAC CCTGTTGTCAATGATGGAGACATGTACCTTTGGCGGCAGTTGGGCATAAATTCATGGCCAACGTTTGCTATAATTGGCCCAAATGGTAAGCTCCTTGCAC AACTTGCAGGAGAAGGTCGTAAGAAGGATCTTGATGATTTTGTGGAGGCAGCACTTCTGTTTTATGGAAAACAGAACATGTTGGACAACACACCAATTAC ATTGAATTTGGAGAAAGACAATGATCCTCGCCTATTGACATCCCCATTGAAGTTTCCTGGCAAGCTAGCTGTTGATGTCCTCAATAATAGGCTTTTCATT TCGGACAGCAACCATAACCGCATAGTTGTTACTGACCTCAATGGGAATTTTGTTGTACAAATTGGGAGCAGCGGGGAGGAAGGTTTGCAGGATGGCTCCT TTGATGATGCCAACTTCAACCGTCCTCAGGGCCTTGCTTATAATCCAAAGAAAAATATCCTTTATGTCGCAGACACCGAAAACCATGCTTTAAGGGAAAT TGATTTTGTTGATGAGAAAGTGCGTACTCTTGCTGGAAATGGGACAAAGGGATCTGATTATATTGGAGGAGGAAAAGGAGACACACAGCTTCTTAATTCC CCTTGGGATGTATGCTTTCATCCAATTGAAGAAAAAGTTTATATTGCTATGGCTGGCCAACATCAGATTTGGGAGCACAATATATTGGATGGAATTACAA GGGCATTTAGTGGAGATGGTTATGAAAGAAATTTAAATGGATCAAGAGCCCAAAAGATGCCTTTTCATCTTAGGTTAAAGATAGCCTATAGTCTGGTTCG ACAGGATTCTGTGGAGGGGGGTCCTGGGAATTCTACAAGCACATCATTTGCACAACCTTCTGGTCTTTCATTGTCTCAAGATCTAGCGGAGATCTACATA BLAST |
| Tissue | pods |
| Gene name | LI_gene_148628; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_314276
| Blastp | Protein SUPPRESSOR OF QUENCHING 1, chloroplastic from Arabidopsis with 69.53% of identity |
|---|---|
| Blastx | Protein SUPPRESSOR OF QUENCHING 1, chloroplastic from Arabidopsis with 69.27% of identity |
| Eggnog | HAD-superfamily hydrolase subfamily IA variant 3(COG0637) |
| Kegg | Link to kegg annotations (AT1G56500) |
| CantataDB | Link to cantataDB annotations (CNT0001568) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019422591.1) |
| Pfam | haloacid dehalogenase-like hydrolase (PF00702.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |