Id Trinity | TRINITY_DN46969_c2_g2_i7 |
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Name Transcript | Ll_transcript_313275 |
Sequence | TGCTCTTTGGAATTTTATTACTGTGATCTCTCGATTTTAGATCAAATCATTAATGGGGTTGTCTTAATTTTTGTAATTAATGTTGGGTTTCCAGAAATGT GGCATTTTGTTTTGAAACTTTCATTGGATAATTTCTCCATATCACTTGTACTTGAACCCTAGACTGGTAGTGAAACAATATCAGTATTGGCGTCTAGTTA CTAATTTCTTGTACTTCAGGAAAATGGGTAAACTTTTCGCTGCTCATCTTTTCAATGATTTTTATACATTAAATTGACGTGTTGGTTTCTTATTTACTTC AATTTAGTTCCATTGTGGCAACATTTTAAATTATTTTTTATTTTTTATTTTTACGTTAACATACCCCACTAAGTGGAGCCTTTTGCACAAACCAAACCGA TATGGTTATGGTCTATGGATGAGATGCACCCATTCTTTGAGTGAGCAGTCAATCTAAGGGTGAATTTGGTGCAACCGTAAGTTTATTACTTAGTAACCAT GAGGTCACGACTTTAAATTCTGGAATCAGTCTCTCCGCTTGCAGGCGTTATGTCTACGTCTACCCTCTCCAGCCCCACTAAGTAGGAGCCTTGTGTACTT GGTCATCCTTATTTGTAGTCAATCTGATCCTCTTAATAGAATTTAAGGAGAATGGATGTGTACAAAGTTCCAGCTTCAAGAAATTAAAGCATTAAACTAG GCTTTTGTGGCCTTGTGGGCCTATCAGAAGCAACAACATTGTTTTATTTGATTCCTTGTTGCTTTGAGGGCATAGCATATTTCTTGCTTCATATTTAGGC AAGAACGTAGTTACAAAATTTGCGAAACTCCCAAATCTATCGTAAATTGGATCATGCATTTCAGACCATGGTGCTTTTGCAATAGTATGGGTCCAGATTG CCCAAATGCAATCCATCCCCACAGATAAGAAGGAAGTGGCAGATTGAAGCTTACACTGATGGTTTGATTTGATGTGTACATAAATCACTAGTCTCTTAAT TTAAATGGGTTTATAATGTATAACACAGCTCCGCCATGCCCATGTACAACCCTTTTCTTTTTGTCAGCACCTCCTGTCATGATTTATTACTCTCGAGTTC TTGACATACACCAGCCATTTTCCTAAATTACAATGACACACAGCAAATCCCCTCTAACAATCACGTATGATAAATTGTTCCTCTGCTTTTGTTAGTCCAG CATTTAAAGCAAACTTCTTGTGCTTATCCCTTTTTTAACAGATATCATATACACGAATAGGCATATTTGCCTGCAACAACTGCATATTCTCTGCTCATAT TTGTTTCACATTGTTCGATATCTAATTTTAAAGCTGTCAATTATATATCTAACATTGACCCAATATTTTCTTATTGAATTGGCAGACTTGGATTTCTTGT TTCATATGTTTTTTCTTGCTCGGTACTGCAAGCTTTTAGAGGAGAACTCGTTCAGAGGGAGGACTTATGATTTCTTGTACATGCTCTTATTTGGTGGCAC TGTATTGACTGGAATTGTTCTACTTGGTGGGATGATACCTTATTTGTCAGAGTCCTTTGGAAAAATTATATTCCTTAGCAACTCATTGACATTTATGATG GTTTACGTTTGGAGCAAACAAAACCCCTTCATTCATATGAACTTCCTAGGCCTCTTTACCTTCACTGCTGCTTACCTTCCATGGGTTCTCTTGGGATTCT CTGTCCTTGTTGGTGCTAGTGCCTGGGTGGATCTGCTGGGAATGATTGCTGGTCATGCATACTATTTTCTTGAAGATGTGTACCCTCGGATGACTGGTCG TCGACCCCTTAAAACACCATCATTCATCAAAGCTCTATTTGCCGATGACACAGTTGTCGTAGCACGACCTGACAATGTCCGATTTGCTCCCCCACCAGCC GAGCAACTTCACCAAGATTGAAGTAATGAGAAGCATAATAGCCAGAGACACCAAAGTGGTTATAACCTTGTAATATATAGATATATACGTTTTTCCCTGC GTGCATATCACGATTTAAGGTGCACTATGATGAATGTCCAAAGTTTTTTGTTAAATGAGATAACTTAGTTTCCCCTTCCTCTTTAGCCCATTTCTTGTAC CAAACTCCATCTCGTAGATATTGATTCTCCTTTTTTGTTCTAATTATTATCACCTCTCACTTTCCAACTATCATTCCTAATACTAAAATCCTCGGCATGA AGCATCTAACACTGACTTGTGGTAGTAGTTTCTCAAGAATGAAAATACAATTGAGATATCTTATACCATATGTAATGCAGTTTTCTTTCTCTACATAGAA AATATTAATGACTGGGA BLAST |
Tissue | pods |
Gene name | LI_gene_148675; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_313275
Blastp | Derlin-2.2 from Arabidopsis with 85.96% of identity |
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Blastx | Derlin-2.2 from Arabidopsis with 74.3% of identity |
Eggnog | Derlin 1(COG5291) |
Kegg | Link to kegg annotations (AT4G04860) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019439814.1) |
Pfam | Der1-like family (PF04511.14) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |