| Id Trinity | TRINITY_DN46995_c1_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_313288 |
| Sequence | GAAAACAATAGAAAAAGAAAGAGAAAGATTAGCTTACGTAGAGACCAAATTCAAACCGAAGAAAGAGCGATGTTGTCGCTCTGATATTGTAATGTTTACA TTCAAAGGTACCATATTGTTCGGTTTTTGTTACAGAAAGAAAGAAGATGAAGAAGAAGACAGAGGAAATGGGTCCTCTAACACCAACACCATTAATGGAT ACTATCTATGATCTCATTGAAGAAGCCAAGCTCCGTTTTCTATGGTGGGCACTTTGTATTTTCTCCATTTCCTATTTCTTCACTCATACAAGTAAATCAA TGTGGATGAATGTACCCATTTCGATTGTATTTGTGGCTGCTCTGCGCATTCTTTCGAACAAGGTGGAATTCCATTGGAAGGTTCAGCCACCTAGAAGAAG AACTTATCTATCTCATTTGGAGAAAAAACAGTTGTCACTGAATGATGCACGCCTCTCATCCTCACCACCGCGTCCCAAATGGAAGAAGAAGATTGATTCT CCTGTTGTTGAAGCTGCCTTGAATGATTTCATTGATTTGATCTTGAAAGATTTCGTGGTAAATTTGTGGTACTCAGAAATTACTTCAGATAGGGAGTTTC CTGAGCAGATACGCGACTTAATCATGGATGCTCTTGCTGAAGTGTCAGCGAGAGTTAAAGAGATAAACCTTGTTGACTTGATAACTAGGGATATAGTTGA TTTAATAGGTGATCACATAGAGCTTTTCAGAAGAAACCAAGCTGCCATAGGTGTTGATGTTATGTTAACATTATCTTCTGACGAGAGGGATGAAAGGTTG AAGTTCCATCTGTTGAATTCTAAGGAGCTTCATCCAGCACTAATATCACCAGAGAGTGAGTACAAGGTTCTTCAGCAGCTAGTGAGTGGGGTATTAGCTG CAGTACTAAGACAACGAGAAGCTCAATGTCCGGTCATTCGATCTATAGCTCGGGAAATTATAACTTGCTTGGTATTGCAACCTGTTTTGGATTTGGCAAG CCCTGGGTATATCAACGAGGTGATTGAATCTCTTATACTTGTCCTTCATGAAAATGGTTTAAATTGGATGGGTGGTGCTGATCATTCGAGTACTGCTGCA ACTGATCAAAATCATGGTCATTCGGTCGATGGCGGGGTTCGACATGATAGTCACACTGGCTCTGCTGATTGGGCACAAATGCTGGAAGCTGCAACTCAGA GAAGAACTGAAGTTCTTATGCCTGAGAATCTTGACAACATGTGGGCAAAGGGGAAGAATTACAATAGGAAAAAGGATAAATCACTGAATAGTGTGGGTTC AGAATCTCAACTAAATGTTGGAAGCACAATTAGGTCAGAGTCTTCACTGGATCCTGACATGGAACTATGTTTCGAAACAGTGCGACACCAAGTGGATGAA GTGAACGATGTCAAGGATGTTGTTGCTGCTAATAAATGTAAAATTCCTCTCAAGAGATCAAACAGCGCCTCTGCCTTAGGATTCCAAACTAATAAAGGAG GATCCACAATGTCAGAGTTCAATACCTCTGAGTTTGAGAAGCATGGTGAAGGATTTCGGGGTAAGAGTGGCCAGGGACATTTTGTTCCCAAGCTTCGGTG CCGGGTAATGGGAGCATATTTTGAGAAACTTAGTTCCAAATCTTTTGCTGTCTATTCAATCGCAGTGACTAATGGGCAAGAAAATACTTGGTTTGTAAAG AGAAGATACAGGAATTTTGAGAGATTGCACCGATATCTAAAAGAAATCCCCAATTACACATTACATTTGCCTCCTAAAAGGATATTTTACTCAAGCACAG AGGATGCCTTTGTGCATCAGCGTTGCATTCAACTTAATAAATATCTTCAGGATCTCTTGTCGATTGCTAATGTTGCTGAACAACATGAAGTGTGGGACTT TTTGAGTGTTTCCTCAAAGAGCTATTCTTTCGGGAAATCTTCTTCAATGATGAGGACCTTGGCAGTTAATGTAGATGATGCTGTGGATGATATTGCACGC CAGTTTAAAGGAGTTCCAAATGGTTTAATACGAAAAGCTGGTTGTTCAACATCCCCCACCACTGAAGGTTCTTTTCCGTCTAACACTTGGAACTCTACGG ATGAACTGGATAAAAATATTTCCAGGCAAATTGTTTCAGAAAGTGTGCTAAGCTCTGATAATGAGGTAGAAGTTCATGTTGGCAATGAGAATATTGTTGG AGAAGTAGCAGAAGATAATGGGTGGCATTCCGACAATGAATTGAGCTCGAGGGATTATTCACAACAGGTAGTAAATAATGGTAAAGAGTCTAGTAACTTG GATCAAGATAGAAAACATGATGTGATGATGGAAGCTAAGGTTGGTAAGGATGTTTCAGCTACAAATTTGACTCTAATACCTGATAATTTGGAGGATCCAG TTGGAGTTCCACCTGAGTGGACACCACCAAACGTGAGTGTTCCTATTTTGAATTTGGTTGACAACATATTTCAGCTTAAGAAAAGAGGCTGGCTAAGAAG ACAGGTCTTTTGGATTTCAAAGCAGATATTACAGTTGGTGATGGAAGATGCTATTGATGATTGGCTCTTGCGGGAGATTCATTGGCTCAGAAGAGAGGAT ACTATTGCCCAAGGGATTCGGTGGATCCAAGATATCTTCTGGCCTGGAGGTACTTTTTTTGTAAGATTACGGGCTCCTCAGGTATTAAGTGGTGGCAGCG GATTTGATCAAAAGCCTTCGCAAACGTTAAGTGAATCTGGTGGAATTAAGATGGCTAAATCAGGGTCAGGGTCTTTTGAGCAACAGCTTGAGGCTGCAAG AAGAGCAAGTGATCTCAAGAAACTGCTTTTTGACGGAGCTCCAGCAGCCTTAGTCAGCTTAATCGGGCAGAAACAGTACAGACGATGTGCCAGCGATATA TATTATTTCAGTCAGGTTAAAGTTCTTTCTCATTTCTAGGATGATATATATGTACAACTGATTCGGACAACTTTGCAATATATAAGTACTCTGCATTATA AATCGCAAAGTTGCTCGGTAGGCGTCAAGAATTTTTATTCAGAAAACATTTTTGTTCTTTCTTGTGTTTGTTCTAGTTTTTTTGTGTCTATTTTCTCAAC TTACTTTTCTTCTTCTAAACTAACAATTACACTTATCTTATTTCATTGTAGTCTTCTATATGTGTGAAGCAACTTGCTTATGCCATCTTTGAACTTCTAC TTATATCCATCTTCCCTGAGATGAGGAATGTTGTGATGAGTGTTCATGAGAATATGCATGTTCACCAACCTGTATAGAATCACCAACCAGTTAGAGTGCC ATGCTTATGTTCAAGATCAGATCTTGAGATTGGGAAAACCATGTTTCTTGTATCCTCTTGTGTGATTGATGATGGTTTCTTCTTCTCTTGAGAACTTTGG AAATAGTTTTGTAAACTTAGACATAGATTGTGTATATAAGCAATCATTTTTGTGGATTCCTTCCTAATTTCTCAGAATATTTACCCATTCTTTATAATAT ATAGTTAATATTCTTTACTCACTCACCAATGAGCATTGGTATTTGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_148864; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_313288
| Blastp | Sorting nexin-13 from Mus with 26.36% of identity |
|---|---|
| Blastx | Sorting nexin-16 from Mus with 39.77% of identity |
| Eggnog | Sorting nexin 13(ENOG410XRJ0) |
| Kegg | Link to kegg annotations (217463) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420514.1) |
| Pfam | PXA domain (PF02194.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |