| Id Trinity | TRINITY_DN46995_c1_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_313289 |
| Sequence | AAATAAAGTAATCAAATTAGGAAAAGTAAAATCCTAACAAGAAAACTAGCAAAACAAAAAAAGTGAATATATGGTAGTAGTTACCACTTATCATGATAAC CTCAACTCCAATCTGTCTTTGAGCACGTTAGATTCGATTGTTTAAGGTCATCACCAACTCATAAATCTTAAACAATATTAATAAACCAAAATCCCAGGTC TTATTTATTGTCTTCCTTTTCTTTTCTTTCAGAAACAAATCCCCCAAAGAATCTTTCACACCCACACAGAGAAAGAAAGAAAGAAACACCGTTACTGTCT GATTCGAATAACGCAGAACTCAAGTGTTCGATTGATTGATTAAGATTTATAATGAAAGCTATGGAAACCGTTTATGATCTGATTGATGAGGTTAAAGTTC GCACTCTTTGGTGGTTCCTTTGTATATTCGCAGTTTCTTATTTCTTAACCAATACAAGTAAATCAATGTGGATGAATGCACCTATTGCAATTCTATTTGT TTCTGCTCTTCGCATTATTTTCAACACGGTAGAATTCCGTTGGAAGGTTCAACAACCTAGAACACAGACATATCTTTCTCACCTGGAGAAAAAACAGTTG TCTCCTAAAGATCCACGCCTCTCTAGTTCGCCTACCCCGGCGAAATGGAAGAGGAAAATTAATTCTCCCGTTGTAGAGGCTGCAATGAGTGATTTTATTG GGATGATATTGAAGGATTTTGTGGTAGATTTGTGGTACTCTGAAATTACTCCAGATAGGGACTTTCCTGAGCATATACACGAAATAATCATGGATGTTCT CGCTGAAATATCAGGAAGGGTTGAAGAGATAAATCTTGTTGACTTGCTGACAAGGGATATAGTTGATTTAGTAGGTGATCACTTGGAACTTTTCAGAAGA AATCAAGCTGCTATAGGTGTTGATGTCATGAAAACGTTATCTTCCGAGGAGAGGGATGCGAGATTGAAGTTCCACCTGTTGAACTCTAAGGAGCTTCATC CAGCGCTAATATCTCCAGAGAGTTCTTCAGCGGTTAATGAGTGCAGTTTTAGCCACAGTGCTTAGACAACGTGAAGCTCAGTGTCCTGTGATTCGATCTA TAGCTCGTGAACTTTTAACTTGCTTGGTAATGCAACCTATTATGAATTTGGCAAGCCCAGGGTATATTAATGAGCTGATCGAATTGCTTCTACTAGTCCT TAATCATGACGGTACACAATGGATGGATGGTGATCAGTCAACTAATGTAGTGAGTCATCACCATGGTGATTCTGTAGCTACTGGGATGGAACATGACAAT CTCACAGCCTCTAATAAGCATCCATCTCTAAATCAAGGGACTGATATGACACTGACTAAAGCAAATCACCAGGGAGAGACATCATTGCAATATAACACAC ACACTCAAGAAACTTTGCAGGCCAGGCCTGGTGATTGGGCACGAATGTTGGATGTTGCAACTCAGAGGAGAACTGAAATTCTTATGCCTGAGAATCTTGA GAACATGTGGACAAAAGGAAAGAATTACAAAAAGAAAGAGAACAAAATTAAAAAAGCTGGCTTCCGGGATATTCCTGCAAAGAGTCCTGCCATGGAAAGC TCACTTCCTTATAGAAAATTGGCACAGGAAACATCAACAAGTAAACTTGGAAATCATACAGTTCTAGAAGGAAAGTCTTCGCTGCCGTCAATGCATACAT TTGGTTCAGATCATCAACAAAATGTTGGAAGCACAAGTAGGTTAGAAACTTCTAAGGACCCTGACAAAGAATTATCTTTAGAGGGAGAGCATCAAGATGA TAAAATAAAGGGTATCAGGGATCCTGCTTCTAATGTCCCTAAAAGTCCGCTCAAGAGATCCAATAGTGCTTCTGCCTTGGTAATCCAACCTAACAAAGAA GAAGGCTCCATAATTTCAGAGTTCTACACCCCTGAATATGAGAGGAGCAGTGAAGGATTCCGGGGAAAGAGTTCTTCTGACATGATTGTTAGGAAAGAGG GGCAATTACTTCCTAAGCTCCGCTGCCGGGTGATGGGAGCTTATTTTGAGAAACTTGGTTCCACATGTTTTGCTGTCTATTCAATTGCGGTGACTGATGC ACAGAATAAAACTTGGTTTGTGAAAAGAAGATACAGGAATTTTGAGAGACTGCATCGGCATCTTAAAGATATTCCCAATTATACATTACATTTGCCTCCT AAAAGGATATTTTCCTCGAATACAGATGACGCTTTCGTACATCAACGTTGCATTCAGCTTGATAAATATCTCCAGGATCTTCTGTCAATAGCTAATGTAG CCGAACAACATGAAGTATGGGATTTTTTTAGTGTTTCCTCAAAGAACTACTCTTTTGGAAAATCTTCTTCGGTGATGAAGACCTTGGCAGTCAATGTAGA TGATGCTGTGGATGATATTGTACGCCAGTTCAAAGGGGTTTCAGATGGTTTAATGCGAAAGGTTGCTGCTTCATCATCCCCCATCTATGAAGGTTCTTAT ATGCCTACCACATTGAACTTGTCCTGGAATGCAGATGAAATGGATAAAATTATTCCAAGGCGAAATACGGCAGAAAGTAGGTTATCCTCTGATAATGAGG ATGGTGAAAAGAATAGTAATACTAGCGAGAATATTGATAGAGAAGTAGCACAAGATAATGGGTCACATTTTGACAATGTGTTGATCTCAAAGGGTTACCC ATCACGAGTAATAGACCGCAGTGAAGAGCCTGGGAACTTAGATTCAGATATAAAGCATGATATGGTGGAAGCTAGGGTTGGCAACGATGTTCCTGCTACA AATTTCACCCTAAAATATGACAATTTAGAGGATCCAGTTGGAGTGCCACCTGAGTGGGCCCCACCTAATGTCAGTGTTCCTATTTTGAATTTGGTTGACA AGATATTCCAGCTTAAGAAAAGAGGCTGGATAAGAAGACAGGTCTTTTGGATATCGAAACAGATATTACAGTTGGTGATGGAAGATGCTATTGATGATTG GCTCCTGAGGCAGATTCACTGGCTCCGGAGAGAGGACACTGTTGCCAAAGGGATTCACTGGCTCCAAGATGTCCTGTGGCCTGGGGGTACCTTTTTTCTA AGATTAAGGACTCCTGAGATAATGAGTAGTAGCAGTGGAATTGATCAAAAGGCTTCGCAAACAAAAAGTGTATCTGGTGGAAGCAAGAGCGGGACATCTG CGTCGGGGTCTTTTGAGGAGGAGCTTGCGGCTGCCCGCAGAGCAAACAATGTGAAGAACCTTCTGTTTGATGGAACTCCAACGACCTTAGTCAGCTTAAT CGGGCACAAGCAATACAGACGTTGCGCCAGGGATATATATTACTTTACTCAGTCTACTATATGTGTGAAGCAACTTGCTTATGCAGCCCTGGAACTTATA CTATTGTCGGTCTTCCCGGAGATGCGGAATGTTGTCTTGAGTGTTCATGAGAATATGAACGTTCACCAACCTGTATAGAGTAGTGCCATGCACGTGTTGT AGATGAATGAGATCGTGAGAAAATGATTTGGCTAATTTTATGGCTTTGCAAGAATAGTTGGCATGACTAATGTGATTTTTCCTTATATAGGGAACTTTAG GGGTTTGGTTTTGTATCTGTTTCAAACTGTATAAAGCTTGGGCTTAGGGTGTGTACATAAACAACCATTTTGTGGATTCTTTATGGCATTATTCCCCATT TTAATGGGGGCTTTTTTATTTATTGTTGCAGACTCTAAAAAAGAATCTGACTAATATTCTTTATTCCTTTCTCATTGGGATTTGAGGTATTTCATTATTT AAAATTAGCAGTCCCATGTTTTGCCTTTATTACATGAACAAGTGTTGGCCACGACAGTATCTCATGTTGGCGTTGCCTTTTGTGAATACTTAACTTTTAT CCTTAAATAGTTGCATACTTCGGAGTTTATAATAATGGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_148865; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_313289
| Blastp | Sorting nexin-13 from Mus with 22.81% of identity |
|---|---|
| Blastx | Sorting nexin-16 from Mus with 37.5% of identity |
| Eggnog | Sorting nexin 13(ENOG410XRJ0) |
| Kegg | Link to kegg annotations (217463) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445759.1) |
| Pfam | PXA domain (PF02194.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |