Ll_transcript_313297

• Id Trinity: TRINITY_DN46995_c1_g2_i5
• Name Transcript: Ll_transcript_313297
• Sequence: AAATAAAGTAATCAAATTAGGAAAAGTAAAATCCTAACAAGAAAACTAGCAAAACAAAAAAAGTGAATATATGGTAGTAGTTACCACTTATCATGATAAC CTCAACTCCAATCTGTCTTTGAGCACGTTAGATTCGATTGTTTAAGGTCATCACCAACTCATAAATCTTAAACAATATTAATAAACCAAAATCCCAGGTC TTATTTATTGTCTTCCTTTTCTTTTCTTTCAGAAACAAATCCCCCAAAGAATCTTTCACACCCACACAGAGAAAGAAAGAAAGAAACACCGTTACTGTCT GATTCGAATAACGCAGAACTCAAGTGTTCGATTGATTGATTAAGATTTATAATGAAAGCTATGGAAACCGTTTATGATCTGATTGATGAGGTTAAAGTTC GCACTCTTTGGTGGTTCCTTTGTATATTCGCAGTTTCTTATTTCTTAACCAATACAAGTAAATCAATGTGGATGAATGCACCTATTGCAATTCTATTTGT TTCTGCTCTTCGCATTATTTTCAACACGGTAGAATTCCGTTGGAAGGTTCAACAACCTAGAACACAGACATATCTTTCTCACCTGGAGAAAAAACAGTTG TCTCCTAAAGATCCACGCCTCTCTAGTTCGCCTACCCCGGCGAAATGGAAGAGGAAAATTAATTCTCCCGTTGTAGAGGCTGCAATGAGTGATTTTATTG GGATGATATTGAAGGATTTTGTGGTAGATTTGTGGTACTCTGAAATTACTCCAGATAGGGACTTTCCTGAGCATATACACGAAATAATCATGGATGTTCT CGCTGAAATATCAGGAAGGGTTGAAGAGATAAATCTTGTTGACTTGCTGACAAGGGATATAGTTGATTTAGTAGGTGATCACTTGGAACTTTTCAGAAGA AATCAAGCTGCTATAGGTGTTGATGTCATGAAAACGTTATCTTCCGAGGAGAGGGATGCGAGATTGAAGTTCCACCTGTTGAACTCTAAGGAGCTTCATC CAGCGCTAATATCTCCAGAGAGTGAGTACAAGGTTCTTCAGCGGTTAATGAGTGCAGTTTTAGCCACAGTGCTTAGACAACGTGAAGCTCAGTGTCCTGT GATTCGATCTATAGCTCGTGAACTTTTAACTTGCTTGGTAATGCAACCTATTATGAATTTGGCAAGCCCAGGGTATATTAATGAGCTGATCGAATTGCTT CTACTAGTCCTTAATCATGACGGTACACAATGGATGGATGGTGATCAGTCAACTAATGTAGTGAGTCATCACCATGGTGATTCTGTAGCTACTGGGATGG AACATGACAATCTCACAGCCTCTAATAAGCATCCATCTCTAAATCAAGGGACTGATATGACACTGACTAAAGCAAATCACCAGGGAGAGACATCATTGCA ATATAACACACACACTCAAGAAACTTTGCAGGCCAGGCCTGGTGATTGGGCACGAATGTTGGATGTTGCAACTCAGAGGAGAACTGAAATTCTTATGCCT GAGAATCTTGAGAACATGTGGACAAAAGGAAAGAATTACAAAAAGAAAGAGAACAAAATTAAAAAAGCTGGCTTCCGGGATATTCCTGCAAAGAGTCCTG CCATGGAAAGCTCACTTCCTTATAGAAAATTGGCACAGGAAACATCAACAAGTAAACTTGGAAATCATACAGTTCTAGAAGGAAAGTCTTCGCTGCCGTC AATGCATACATTTGGTTCAGATCATCAACAAAATGTTGGAAGCACAAGTAGGTTAGAAACTTCTAAGGACCCTGACAAAGAATTATCTTTAGAGGGAGAG CATCAAGATGATAAAATAAAGGGTATCAGGGATCCTGCTTCTAATGTCCCTAAAAGTCCGCTCAAGAGATCCAATAGTGCTTCTGCCTTGGTAATCCAAC CTAACAAAGAAGAAGGCTCCATAATTTCAGAGTTCTACACCCCTGAATATGAGAGGAGCAGTGAAGGATTCCGGGGAAAGAGTTCTTCTGACATGATTGT TAGGAAAGAGGGGCAATTACTTCCTAAGCTCCGCTGCCGGGTGATGGGAGCTTATTTTGAGAAACTTGGTTCCACATGTTTTGCTGTCTATTCAATTGCG GTGACTGATGCACAGAATAAAACTTGGTTTGTGAAAAGAAGATACAGGAATTTTGAGAGACTGCATCGGCATCTTAAAGATATTCCCAATTATACATTAC ATTTGCCTCCTAAAAGGATATTTTCCTCGAATACAGATGACGCTTTCGTACATCAACGTTGCATTCAGCTTGATAAATATCTCCAGGATCTTCTGTCAAT AGCTAATGTAGCCGAACAACATGAAGTATGGGATTTTTTTAGTGTTTCCTCAAAGAACTACTCTTTTGGAAAATCTTCTTCGGTGATGAAGACCTTGGCA GTCAATGTAGATGATGCTGTGGATGATATTGTACGCCAGTTCAAAGGGGTTTCAGATGGTTTAATGCGAAAGGTTGCTGCTTCATCATCCCCCATCTATG AAGGTTCTTATATGCCTACCACATTGAACTTGTCCTGGAATGCAGATGAAATGGATAAAATTATTCCAAGGCGAAATACGGCAGAAAGTAGGTTATCCTC TGATAATGAGGATGGTGAAAAGAATAGTAATACTAGCGAGAATATTGATAGAGAAGTAGCACAAGATAATGGGTCACATTTTGACAATGTGTTGATCTCA AAGGGTTACCCATCACGAGTAATAGACCGCAGTGAAGAGCCTGGGAACTTAGATTCAGATATAAAGCATGATATGGTGGAAGCTAGGGTTGGCAACGATG TTCCTGCTACAAATTTCACCCTAAAATATGACAATTTAGAGGATCCAGTTGGAGTGCCACCTGAGTGGGCCCCACCTAATGTCAGTGTTCCTATTTTGAA TTTGGTTGACAAGATATTCCAGCTTAAGAAAAGAGGCTGGATAAGAAGACAGGTCTTTTGGATATCGAAACAGATATTACAGTTGGTGATGGAAGATGCT ATTGATGATTGGCTCCTGAGGCAGATTCACTGGCTCCGGAGAGAGGACACTGTTGCCAAAGGGATTCACTGGCTCCAAGATGTCCTGTGGCCTGGGGGTA CCTTTTTTCTAAGATTAAGGACTCCTGAGATAATGAGTAGTAGCAGTGGAATTGATCAAAAGGCTTCGCAAACAAAAAGTGTATCTGGTGGAAGCAAGAG CGGGACATCTGCGTCGGGGTCTTTTGAGGAGGAGCTTGCGGCTGCCCGCAGAGCAAACAATGTGAAGAACCTTCTGTTTGATGGAACTCCAACGACCTTA GTCAGCTTAATCGGGCACAAGCAATACAGACGTTGCGCCAGGGATATATATTACTTTACTCAGTCTACTATATGTGTGAAGCAACTTGCTTATGCAGCCC TGGAACTTATACTATTGTCGGTCTTCCCGGAGATGCGGAATGTTGTCTTGAGTGTTCATGAGAATATGAACGTTCACCAACCTGTATAGAGTAGTGCCAT GCACGTGTTGTAGATGAATGAGATCGTGAGAAAATGATTTGGCTAATTTTATGGCTTTGCAAGAATAGTTGGCATGACTAATGTGATTTTTCCTTATATA GGGAACTTTAGGGGTTTGGTTTTGTATCTGTTTCAAACTGTATAAAGCTTGGGCTTAGGGTGTGTACATAAACAACCATTTTGTGGATTCTTTATGGCAT TATTCCCCATTTTAATGGGGGCTTTTTTATTTATTGTTGCAGACTCTAAAAAAGAATCTGACTAATATTCTTTATTCCTTTCTCATTGGGATTTGAGGTA TTTCATTATTTAAAATTAGCAGTCCCATGTTTTGCCTTTATTACATGAACAAGTGTTGGCCACGACAGTATCTCATGTTGGCGTTGCCTTTTGTGAATAC TTAACTTTTATCCTTAAATAGTTGCATACTTCGGAGTTTATAATAATGGAC
• Tissue: pods
• Gene name: LI_gene_148865;
• Additional information: details;

Expression of Ll_transcript_313297

FPKM

• PAB: 4.5
• PNAB: 4.3
• PS1: 8.5
• PS2: 5.7
• PS3: 7.9
• PW1: 6.5
• PW2: 6.8
• PW3: 7.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_313297

• Blastp: Sorting nexin-13 from Mus with 22.81% of identity
• Blastx: Sorting nexin-16 from Mus with 37.5% of identity
• Eggnog: Sorting nexin 13(ENOG410XRJ0)
• Kegg: Link to kegg annotations (217463)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445759.1)
• Pfam: PXA domain (PF02194.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;