| Id Trinity | TRINITY_DN46998_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_314290 |
| Sequence | CACAAATTTAATGAATAAGATCCCCTTCATATAATTCCTTTAGATCCAAAACCTGAAAATCAAAACCCCTCTCTTCTCAATCTCAATTTCGTTTTCCACT ACTCCGTATTCAGATCATGGCAGGAAAAGGAGGGAAGGGGCTTCTTGCAGCGAAAACAACAGCAGCAGCGAACAAAGATAAAGATAAGGATAAGAAGAGA CCCATTTCTCGTTCTTCCCGTGCTGGAATTCAGTTTCCAGTGGGTCGTATCCACAGACAGCTGAAACAAAGGGTCTCAGCTCATGGACGTGTTGGAGCCA CTGCTGCTGTGTACTTGGCTTCCATTCTAGAGTATCTGACTGCTGAGGTTCTTGAACTTGCTGGGAATGCAAGCAAAGATCTCAAAGTGAAGAGAATTAC TCCAAGGCATTTGCAACTTGCTATCAGAGGAGATGAGGAACTTGATACTCTCATCAAAGGAACCATTGCTGGTGGTGGTGTTATCCCTCACATTCACAAA TCCTTGATCAACAAAACCTCCAAAGAATAATATCTCTGTTTTTTATGTCTGTTTATTTAAACTAGGTTGTGTTTGTTATTTTGACTTCGTCACAGTAGGC TAGGATGCTTTCTTTTTATAATTAGATGTTGGCATATAAGTTGGTAGTAATTTTATGTTGTTTTTTAACTGTTTGAATTTGTTTAGACTGGATTTGTAAG GCTGTTGGATTGATTGCTATACAATGCTTTCTTTAGGGTCTGTGATTTGTTGTCTTGATTCTTCATATTTGTTTGCTTAGTCTTTGACATGGGTCAACCT TTGAGCACTGTCTATTAAAGTTGGTCATGGTTGAAGGTGAAGGTAGTGTAAAGTAAAACCAACCATATCAAAATTGATGTGTTCATATGAAAAGGTTGTG GAACTGAAAAGTAGTTGCTGTTAGCTGATCTGTTTTATATTTCATCTTGCTTTGTGGTATGCTCATTCTTGTTTGCAGAAGATTGAGATCTTTGTTTCTT CAAAACCTTTTTATTCAAAATTTAAAACTATCTATAATTAGGCCTGAAGCCAACAGAAGTTTTGACAATATAAAAGAGGTCTATCCATGTAAGCAATACA GAAGTAAGGCATAATGTTGTCTATGTTTCTGTTTAGGCGACATTACAGTTGAAGAGATTTGTGTTTTTCTAGGTGTTGACTCGGTCATGTTTAGTTAGGT GTCGTTGTTTCCCCTAGTTCGGCTGTCTGCCAAAGTGTGATCGACAGTTACATAAGTTGGATCTTATTCGTCTAGTAATGACTCGGAACCATGAGTTGTG AGTGTCTGGATGGAACAGTTGTCCGCAATTCAAGTGGTAACACTCTTCATCCAACACTGGATAATATCAAATTTCCATTTTGTAATATTGGCGTTTAATA CTGCCAAACGTTTCACTTTATGTAGCAACACTACTTGTGTTAAAGCTTTCATATTGTAGTGCTAAATTTTGATTTGCCAATAGTACCTAATAAAGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_148885; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_314290
| Blastp | Histone H2A variant 1 from Arabidopsis with 94.16% of identity |
|---|---|
| Blastx | Histone H2A variant 1 from Arabidopsis with 96.33% of identity |
| Eggnog | histone h2a(COG5262) |
| Kegg | Link to kegg annotations (AT3G54560) |
| CantataDB | Link to cantataDB annotations (CNT0001879) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441900.1) |
| Pfam | Core histone H2A/H2B/H3/H4 (PF00125.23) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |