| Id Trinity | TRINITY_DN47031_c1_g3_i10 |
|---|---|
| Name Transcript | Ll_transcript_373294 |
| Sequence | GAGAGAGAGAGTGCAGAACAGAGGTTGTGTTTGAGAAAGTGAGAAGAAGAGAAAATGGAGATTTCTCCACAAACAACAAATCAAAGTGATAATGTAGTAA TGAAGAAGAAAGAGACAAGAGGAAGAAAACCAAAACCCAAAGATGATCAACAACAAACAAAAAAGAAACAACAACATCAACAAGAACATGAACCTACGGT GGATGAAAAATACACACAATGGAAGTCCCTTGTTCCTGTTCTTTATGATTGGCTCGCTAACCATAACCTTGTTTGGCCTTCTCTCTCTTGCAGGTGGGGT CCTCAACTTGAACAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGACTGATGGTAGTGTGCCGAATACTTTGGTCATTGCAAATTGCG AGGTTGTTAAGCCTAGGGTTGCAGCGGCAGAGCACATTTGTCAGTTTAATGAAGAGGCGCGTTCCCCATTTGTTAAGAAGTACAAGACCATCATACATCC AGGAGAGGTGAACAGAATTAGGGAACTGCCACAAAATTCTAAGATAGTGGCTACTCATACTGACAGCCCTGATGTCCTGATTTGGGATGTTGAAAGTCAA CCTAACCGCCATGCTGTCCTTGGAGCTGCAAACTCTCGTCCAGATTTGATACTAACTGGACACCAAGATAATGCAGAATTCGCTCTTGCAATGTGCCCAA CTGAGCCTTATGTTCTTTCAGGAGGAAAGGATAAATCGGTGGTGTTGTGGAGCATTGCGGACCATATAACTTCTGCTGCAGACCCCACATCTGGTGGCTC AATTATCAAGCAGGACTCCAAATCTGGGGAAGGCAATGATAAATCTGCTGATTCCCCATCTCTTGGACCTAGAGGTGTCTACTACGGACACGATGATACT GTTGAAGATGTGGCTTTCTGCCCTTCTAGTGCACAAGAGTTCTGTAGCGTTGGCGATGATTCTTGTCTTATATTATGGGATGCCCGTGTTGGCTCTAGTC CTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCATTGTGTTGATTGGAATCCACATGATGTTAATCTGATTCTTACTGGGTCGGCTGATAATTC TGTTTGCATGTTCGATCGCCGCAAACTCACCTCTGATGGAGTGGGATCTCCTATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGG TCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCCGAAGATGGTCTCTTAAACCTGTGGGACTATGAGAAGATTGGTAAGAAGATAGAGCGATCCGGAA AACGTGCTCCTCCAGGATTGTTTTTCCAACATGCAGGTCATAGGTATGAAATTACTTTTTCTCTGGTACGCTTGAATATATTTCAGTCGTTTTTCCAACC ATACGCATACGATGCGAGAGATTATGTTTTACTTTTACTTAAACTTGTTTTTAGCCTGGCCATTAAACAATACTTTCTGAATGTGAGCATCATGTTACCA CTGGTTATTGTTCGTCATTTGTTCCTCATATTATCACTTAATACAAGACATCAACTTGATAGTGAAATTCGGAATATCAAATATAAATGGTGCAGAACAT TATAACTAACATTAGTCTGTGCTAGTGGTTTTTCTTTGGTCGTCTTGCTAGATATTGTGCATTCAAGGTATTAAAAAAGGCGGCCCAGTGCACGAGACTC ATACTTTGTAGGGTTTGGGGAGGATAGATGTATGCAGCTTTACCCCCGTAAGCGGAGAGGCTGTTTCCAGGATTTGAACTCGTGGCCTTATGAGATATTA AAATTGATCTCCTAAGGAAGCACAAAACTACATTTGTCTTGCATAGCGTTTTTGTCATCCTTTGGCAGCTATCTTTTTGTCAAAAAGTACACTTTTGTTG TTAATAATCGAGATCTGGTTATTTTATTTGTATTAATTTTCATTTTTTCCCTTTAAAATATTTTTTTTAGTCTTTACTCATGAACTGCTTATTTTTGTTT TGCGTACGATTTTTGTATCGATAATCAGAGACAAAGTGGTTGACTTCCACTGGAATGCATCTGATCCATGGACTATTGTTAGTGTCTCCGATGACTGTCA AAGTACTAGTGGAGGGGGAACATTGCAGATTTGGCGCATCAGTGATTTGATCTACAGACCCGAAGATGAGGTTCTGGCAGAGCTGGAGAAATTCAAATCT CATGTGGTGGCTTGTGCTTCGAAGTCCGAAAAATGATATACTTGATGGACAATAAGTTATTTCTTGCTTATGCTGTGGACTATGGATATCATTCTTGTTA TGTTTATTTTATCTGTTAGCTATGGATGTTTCTTATCTTTTTGAAACCACCTACTTGTTGTTGAAGTAGGGAATGTTAGATTGCAACATGTAGTGATGTG ATTTGTGATTGTGTTCCTCAAATTAATATAATTCTAAGTACTATCTGTGAGCCTTGACATATTGGTCTGTTTCTCGGCCTTCGGACGCTCGTGCATCGGT CGCCTTTTTTAAGCACTATTTGAAGAGCATGATCCTTGGCTCATATGCGGCTCCTCGCATGCCTATATGGTTGGGAAATTAGTGTGTGCACATTGCTCAA ACTTCTAACCATTAAGGGTTTATTTGCAAGTTGGATTTTAGGAGGGAAAGGAAGACCTAGGAGTCATGAAATACAACTCGACTCGCCGACTGTGAAGGAG GGAAGGTAGAAGTGTTTTTCACAAACTTTCCCTCATATAGCTCCTTACAAAACATGCTTTTGAGTTGGCAAATGAGATTGTGTGAAGTTATTGCTGGATG ATAGTACAATGCAAGCGGTTGGTAGTGTGAATCATAGTGCAATTATTAGTATCCATGAGTAATGGTAGTAGTATTAGAAAGTCTTTCCTCAAATTATGAT ACTTAAATTTCTCAACATGTTTAAAAGATTAGCTTTCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_149124; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_373294
| Blastp | WD-40 repeat-containing protein MSI4 from Arabidopsis with 78.68% of identity |
|---|---|
| Blastx | WD-40 repeat-containing protein MSI4 from Arabidopsis with 85.75% of identity |
| Eggnog | retinoblastoma binding protein(ENOG410XNU9) |
| Kegg | Link to kegg annotations (AT2G19520) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415490.1) |
| Pfam | Histone-binding protein RBBP4 or subunit C of CAF1 complex (PF12265.7) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |