| Id Trinity | TRINITY_DN47035_c3_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_371664 |
| Sequence | CAGCCATGCTAAAAATGGCCTCCGTTATTTCCATCTCCTTCTCCTTCAATCTCTATATTGAACCATTGAATTGCAACGATAGTTAAAGAAGAACGCATCA GAAAAAAAACGAACACAAACCAAAATGGTGCACAGCGCCTACGATTCCTTCGAGCTCCTCACTGATTGCCCTTCCAAGATCGAATCCATCGAATCCTACG GTTCCAAAATCCTCCTCGGCTGCTCCGACGGATCTCTCCGTATCTACGCGCCGTCGCAGCCTCCGCCGTTATCGCAACCGGAGGAGCTGAGGAAGGAGCC TTACGCGCTCGAGAGATGCGTGAGCGGCTTCGCGAAGAAGCCTCTCATTTCAATGCAGGTTGTGGAATCGAGGGAGCTGCTGTTGTCATTATCTGAATCC ATCGCGCTTCATAGGCTACCCAATTTTGAAGCTGTAGCGGTTATCACTAAGGCCAAAGGCGCCCATGTGTTTTGCTGGGACGAGGAAAGAGGGTTCTTGT GTTTCGCTAGGCAAAAACGGGTTTGTATTTTCAGACATGATGGTGGTAGAGGATTTGTGGAGGTGAAAGACTTTGGTGTTCCTGATGTGGTGAAGTCGAT GTGTTGGTGTGGTGATAATATATGCTTCGGGATTAGAAAGGAATATTTGATTTTAAATGCTGCAAATGGCGCATTATCTGAGGTTTTTACTTCTGGGAGA CTAGCACCCCCTTTAGTTGTCCCTGTTCCTTCTGGAGAACTGCTACTTGGGAAGGAGAACATTGGTGTATTTGTGGCTCAAAATGGGAAACTTCGTCCAG ATGGTAGGATTTGCTGGTCAGAGGCCCCAGCAGAAGTTGTAATGCAAAAGCCATATGCTATAGCACTACTGCCTAGATTTGTGGAGATTCGATCTCTCAG AGATCCATATTCACTGATACAAACAGTAGTTCTTCGAAATGTACGCCATCTTCGCCAAAGCAATAATTCTGTGATTCTTGCTTTAGATAATTCTATTCAT GGCCTCTTCCCAGTTCCTCTTGGAGCCCAGATTGTCCAATTAACAGCCTCTGGCAACTTTGAAGAAGCCTTGTCATTGTGCAAAATCCTTCCACCTGAAG ATTCAAGTCTTCGTGCTGCAAAGGAGAGTTCAATTCACATAAGATATGCCCACTATCTTTTTGACAATGGCAGCTATGAAGAGGCAATGGAACATTTTCT GGCATCTCAAGTAGATATAACCCATGTGCTGTCTCTTTATCCATCAATTATCCTTCCAAAGACAACAACTATTGTTCATGACCAAGAGAAGTTGATGGAC ATTTATGGGGATTCTTTATATCTCTCCAGAGCTTCTTCGGGTGTATCAGATGATATGGAGTCCTCTTCAGGATCTCATTTGTCAGAACCTGATGAGAATG CAGCACTCGAGTCCAAAAAAATGAGCTATAATATTCTTATGGCTCTCATAAAGTTTTTGCAGAAGAAGAGGTACAGTGTTATTGAGAAGGCCACTGCAGA GGGAACCGAGGAAGTTGTTTTAGGCGCAGTAGAGGATAACATCTCATCCTATAATAGTAGTAGGTTTAAGAAACTAAACAAGGTCGGTGGTAGTGTACCT ATTAGTTCAAGAGCTCGGGAGATGGCTTCAATACTGGATACTGCTCTACTCCAAGCCTTCCTGCTTACTGGGCAAACTTCAGCGACTGAAGAATTACTGA AAGGTCTTAACTACTGTGATCTGAAAGTATGTGAAGAAATACTTCAGGAAGGCAGCTATCATGTTGCTTTACTAGAACTTTACAGTTGCAACTCAATGCA CCGGGATGCTCTTGAACTTGTTCACAAATTGGTGGAAGAGTCAAAGTCTGGCCAATCTGAGATTAAGCATAAGTTCAAGCCTGAGACCATCATTGAATAT CTCAAGCCGCTGTGTGGAACAGACCCCTTAGTTGTTTTAGAGTTCTCAATGCTTGTTCTTGAAAGCTGCCCAACCCAAACTATTGATCTCTTTCTGTCCG GAAATATTCCAGCAGATATGGTGAACTCATATTTAAAGCAACATGCTCCAAACATGCAAGCCATGTACTTGGAGCTCATGCTTGCGATGAATGAGGATGC CATATCTGGAAATCTGCAAAATGAAATGGTAGACATCTATCTTTCCGAAGTACTTGATTGGCAAGCGGATTTAAGTGCTCAAGGGAAATGGGACGAAAAA GCTTACTCCCCAAAGAGGAAAAAATTATTGTCGGCCTTGGATAATATATCAGGATACAATCCAGAGGCTCTTCTGAAACGTCTTCCACTAGATGCTTTAT ACGAAGAGCGTGCAATATTGTTGGGAAAAATGAACCAACATGAACTAGCATTATCTTTGTATGTTCATAAGCTTCATGTTCCAGAACTGGCATTATCTTA TTGTGACCGGGTGTATGAGTATATGCTCAAGCCTTCTGGAAAATCTCCAACTAACATATACCTATTGCTTCTGCAAATCTATATGAATCCACAAAGGACA ACCAAGAGCCTTGAAAAGAGAATTACAAATCTATTATCCCCCCAGAAATCAATGATTTCAAGGGTTGTCAGTTCAAAAAAATTACTAAAAACCAGAAGCC GAGGGTCTAAGAAAATCGCTGCAATAGAGTTTGCAGAGGACACAAAAGCTAATTTGAGCAGCACTGATAGTGGCAAGAGTGACGCTGAGGAATTTATTGA GGAAGGAGGTGCTTCTATCATGCATGATGAGGTCCTAGATTTGTTGAGCCGTAGGTGGGATAGAATCAATGGAGCCCAGGCGCTTAAACTTTTACCTAGA GAGACTAAACTGCAGAATCTGATTCCATTTCTTGGACCCCTGCTGAGAAAATCTAGTGAAATGTACCGTAATTGCTCAGTGGTTAAAAGCTTGAGACAGA GTGAGAACCTTCAGGTGAAAGATGAACTCTACAATAAGAGAAAAACAGTTGTGAAGATAACCGGTGATAACATGTGTTCTCTGTGCAATAAGAAAATAGG GGCTAGTGTTTTTGCAATCTACCCCAATGGGAAAACTCTAGTGCACTTCAATTGTTTCAGGGATTCCCAAAGCATGAAAGCTGTAGCCAAAGGGTCTCCA TTGAGGAAGCCATTTTGATTGAAAAGTGATATCAATTGGTGGTTCTGTGAGCATTGCTTTACATACACATAGTAAGGTTGGTACTGTTAAAGTGTGATAT TTGTCTGCAATATCAGTTTGTTCACTTGGACAATCTTATTCATTTGGAGTGCAGAAGGGGAGCCATTTTTTCTCTCATTTTCCCTCTTACTGTTGAGAAA TAAGGTCACTATATAAATAATTGGAATCATTTAAAGATAGCTTCTTTAGCTTTTCTTTGTGTGAATTGGAAACTTTTCTTTGCTTCTTTACTTGCATTAT AGGTACTGATGAGGCAAATTTGAGATTTTCCCCAAGGTTTGAAATTTTATATAAATGCATTTCCCCTTGGATTCGTTGCATTTGGGTTCAGCTATCTCTA AACTAAATAGATAAGTTTTTCCATTGCTTTAGTCTCATTGATCACGTGTAATCAATTGATAGTTTTCTCTCTCTCAAGGGCACAAGTTGAGGAGAGAGAA ACAAAGAGACTTTCTTAGATTTTGTGAAATTTCTCTATATTTCAAAGCTAAGAGCTCAATATTTGGTGATATAAATAGTTGGTCCCAAAATTAGATAGAA GGTGGAGATTGTGTTAGACATTCTAAAGTTACTTAGTATCAAATTGTTGTCCAGAAACAATATGTTGTATTCCCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_149160; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_371664
| Blastp | Vam6/Vps39-like protein from Mus with 27.49% of identity |
|---|---|
| Blastx | Vam6/Vps39-like protein from Mus with 26.92% of identity |
| Eggnog | beta receptor associated protein 1(ENOG410XNSX) |
| Kegg | Link to kegg annotations (269338) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019431559.1) |
| Pfam | CNH domain (PF00780.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |