Ll_transcript_371212

• Id Trinity: TRINITY_DN47036_c1_g4_i3
• Name Transcript: Ll_transcript_371212
• Sequence: CGCCCCATTGCCATTCTTACTTATGGGAAATGAAACATATACCTCTTCAACAACATCAGTTAATTAAGAATTATGATTGATAAAATACAATTAGAAAGAA AAAAGAAGAAGCTTAAAACCTATGCTAACAGCAAATAACGGTGTTAGAAACTTGAAAGCGAATTGCATGGTTCTTCTTCCAATCTCGAAGAAGCAGCTAT GTCTCTCTCTATTGAACTCATGTTCTTCAATCAAACAACTTCATCAAATCCAATCACAAATCCACGTTTCTGATCTTCACCATGACACTTTTTTACTCGC ACAACTCATTTACTCTTTCTCCCTTAAACCCTTCAAAAACCTTAACCATGCACAAAAGCTAGTTCGCTTTTGCAACAACCCATCACCAATTTCATGGAAC ATTCTCATCAGGGGTTACTCCACAACCGATTCCCCCAAAAATGCCATCTGGGTATTCGATGAAATGCGTAAAAATGGGATAAAACCCAATAAGCTCACGT TTCCCTTTCTTTTCAAGTCTTGTGCTGTGGAAAAAGCACTTTTTGAAGGGAAACAGGTGCATGGGGATGCTGTGAAGTTTGGTTTGGACACTGATGTTTA TGTTGGGAACAATTTGGTTAATTTTTATGGTTGTTGTAAGAAGATTTTGGATGCTAAGAAGGTGTTTGATGAAATGCCTGACAGAAGTGTTGTTTCGTGG AACTCGGTTATAACTGCTTCTGTTGAGAGTCTTTGGTTTAAAGATGGAATTGGGTATTTTCTGATGATGAGGGATTATGGATTTGAGCCGGATGAGACAA CGATGGTGTTGTTGCTGAATGTTTGTGCTGAGTTAGGTTACTTGAGTTTGGGAAGATGGGTTCATTCTCAAATTGTTTTGAGAGGGATGGTTTTGAGTGT TCAGTTAGGTACTGCTCTTGTTGACATGTACTCCAAATCAGGATCTGTAGGTTATGGTAAGCTTGTTTTTGGGAGAATGGAGAAGAGAAATGTGTGGACA TGGAGTGCAATGATATTGGGGTTAGCCCAACATGGGTTTGCCGAGGAAGCGCTTCAATTATTCGCGATGATGAGTCACAATAGCAAAGGCATGGTAAGAT CGCGTACTAAAGACCCACGAGGTGGGTCCGACCTTTCACTGGACTCTGTGGATAGCAGGAGCTTTATAGCACCAATTTGCTCTATGGAAAACAATAGTAA CATATGCCCAAATTATGTAACTTATCTTGGTGTTCTATGTGCTTGCAGCCATGCTGGAATGGTGGATGAAGGTTACCGATATTTTCGTGATATGGATCAT GTTCATGGGATCAAACCTATGATGGTACATTATGGAGCCATGGTTGATATCTTGGGCCGTGCCGGCCTTCTTAGCGAAGCTTATGACTTCGTACAGAGCA TGCCTATTGAGCCTGACCCTATCATTTGGCGAACGCTGCTTAGTGCGTGCACCGTCCGTGATGCTCAAGATCATACAGGGATAGGGGATAAAGTAAGGAA GAAGTTGCTTTTGTTGGAGCCGAGGAGGGGAGGGAATTTGGTTATTGTTGCAAACATGTATGCTGAAGTAGGTATGTGGGAAGAAGCGGCAAATGTGAGA AGGAATATGAGAGATGGAGGGATGAAGAAGGTGGCTGGAGAGAGTTGTGTTGATTTAGGTCGGTCCATGTATAGGTTCTTTGCAGGATGTGACTCTCACC GAGATTTGTTCCCTGTCTATCATTTGCTAGATGGGTTGAACCTGCACTTGAAGATGGTTCATTAATTGTCATAGAAATTGGTTTCAGCAAATTCTTCTTG GTGTTGAAGCAGCTGAACTTGAAACTAGAATAGGAGAAATGGCAAGTTGTTTTGTACTGTTAGTCATTTTTGTAAGTTAACATTTTCACCATTTTTTTTG TTTATATTATTTCTAGGATTTGGACACTCATCATCCATGTTTTGTGGCTACTATTTTTTATGTTTACACACCGTTTCTGATATCAGTTTAGTTTCCTAAT CCGATCTCTTAATTTGTTCTTGTTCTGTATTTGGTTTAATCTATTTATGAGTCTTTATACTCTAGCAGGAAAAGAAATAAATAAACTTAACATTATGCTC ATGCTGGCTCTGCTCAAACAAGTGCATTCTTAGAATAGCTCAATCCTCCTAATATAGTTCTTGTTCATTGGTTAGATGATGAGGCTCAAACAGAATATAA TGAGTCAATTTGCTGATCGAAACACAAAATTCCTCACTCGAAAAAATACTAATTTGTCGAAATGTATTTCAATTGGTATAAATGCCTGTACTTGTGACAT TATAGAGAATATATGTGAAGCTAATTTTTCTATCTTCCTCGCAGTGAAGTTCCTCTCTTTATAGTGTCTTGGGAAGGTGAAATGCACGTGCTTGTGGCAT TAAGGTCTGTTTGCGAGTTGAGTTTTAAAGGGGAAGGAAGGGAAAGGGAAAACTTGAGAGCCATGAAACACATTGGTGAGACATTCACGAGTTGATAACA ATTTAACTCATTCTGGTGTGTGTGCACATATGTGTTCAAGATTTGAAGATACTTTCCTGTCAAAGGATAGTTTTCTGATTTAATAATCTTCATATACTCT GTAAGGAGGCATGAACACGGGAGAAGACATAGATCTGCGACACAATTATAGATACGACAAAAGGAATATAAAATGTTATAGAATATGGTTAGAAATATCT AAGATTGTCTAATACAAATATATGTCTATGGTCACAATGGTTATAGTTTGTTCTTCTCCCTCTGTGTATTTGTAGCAGACTAACAGTATTTGCATTAGAT TCATTTCTAGCTGACAAATCTGCTAAGGTTTTCGTTGCTGGTGACAGGGTCGGGTTGGCCCACGGATCTAATCATATCCTCTCATGCCGAGCTCGATCTT AGTCGCCAAAGCCTGAGTTTATCATTGTAGTTGTAGCCAAAGTTGGTGGCATCCATGCTAACGACACGCACCCTGCTGATTTCATTGCCATCACAATCTC CAAATTCAGACAAATATCATCGATTCTGCTTATCGCACTAGCAACAAGAATGCTGACAAACTTCTCATGTTTTACCTGCATTGATAAGGTTTCATGAGGC AGTGGTGTGGCGTATGGATAGTCTATTGAGGGAGTTTTTACATGTCGATAATCTTGCCGATGCGGTTGTGTTCATGATGGTGAAGTACAGTGGATTGGAG CATTGGAATGTAGGGAGTGGAAAAGATGATGATGAAGAAAGTGGTGGGATTTGAAGGGATCTTGTTTGGGATACTACTAAGCTTGATAGAACTCCAAGAA AGTTGATGTATATTATGTTGGACCCCAAAAATCTCAATCAAAAAAGGGC
• Tissue: pods
• Gene name: LI_gene_149173;
• Additional information: details;

Expression of Ll_transcript_371212

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0
• PS2: 0
• PS3: 0.2
• PW1: 0
• PW2: 0.2
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_371212

• Blastp: Pentatricopeptide repeat-containing protein At2g36730 from Arabidopsis with 52.68% of identity
• Blastx: Pentatricopeptide repeat-containing protein At2g36730 from Arabidopsis with 49.91% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT2G36730)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019446938.1)
• Pfam: PPR repeat family (PF13041.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;