Ll_transcript_372547

• Id Trinity: TRINITY_DN47038_c2_g1_i14
• Name Transcript: Ll_transcript_372547
• Sequence: TATGCTTGGTCATGCTGGACCTTGGGTGTGATGACCTGGTTATTGAGATGTTTCAGCATTTCTTGACAAATATAAGGTTCGAACCATGGCATCATATCTT TCATATTTTATTCCTGTTCCGAACTTATAGATTTCGTAATATTTCAAAAAGCACAAGATCTCTGAAATTCCTCCACACAACTTTTAGATTTCTTTTCTAA TTTATTTCCTAGTGGATATCTGAACTCTGTTGGGATAGTTGATGTGTAAACAATGTTGTAATTCTGGCAACACTTGTTGAAGTTGATCACTTAACTAGAA GATGATTTTGATGTTGTAATCATGAGTCAGCTTTTCTGTATATCGAGAATATATTACCAGATTGTATTTTCCAACTATAAGTTTTAATTCATCTCTGGAG TGATTAATGACTTAAGGTATTGCTTGCTCAATTTAAAGGTCAAACCATCTACGCCATGTAATTGATTGCATGCAAAACATAATGACCACGGTCTTGAGTG AATCTGACGAAATTTCCTTAGATCTTCTAAGACCTCTATTACACAGTGTAAGAAATGAAAATCAGACTATTTCACCCATTTCTTGGACATTAGGGGAGAA AGTAATTACGAATTGTGCCATTAAGCTTAAGCCCTATCTCATGAAAGCAGTGGAGTCTTCAGGTCGAACTCTTGATGAGTATGCACAAATAGTTTCTACT ATTTGCCAGAATGGATTTGAATCCTCCAAACATGATCATTCAAATGGTTCTAAGGGGAAAGAGGTGATCATGGTTCATGAACCAGATATTACTTGTGTGA TAGATGTCCTAGCTATGGATGATACTAAATTAAACATTAGAAGTGCCGGTGCCAGTGCTTCTACTAAGGATCCTGAAGTTATCAAAAAGTCTAGGTCAAA AAGGAAAAAGCATTCTGATCCTATCAATCACTCGAAAAGAAGCAACATAAAAACCGATCCAGAAAATTGCAATTTAGTGTCTGAGCAGGAGCCAAAATCA GAAACTCGGCTGAACACTGTACCAAGGAAGAGAGATCGTAAGCAGAATTGTTTATTGAACGCAGGGGAAGGCTATGATGGCTCTTGCGTTTCTGAGGGAA CAAAAACTGGAAAATCAGCTCTATCCAGAAAGGCTCATGGTAGCAGCTCTTCTTTTTCACCTTCTGAAAAACCTGCTTCTAGAAAGGGCAAGTTGCAGTC AAAGCCTAAAACTGCAAGTGAAGGTCTAGTTTCTAAGCCACTAAATGTGAACAAAGTAAAACCTGCGCAGTCCAGAAAGACGCATAATGTTGGCAGCATT GTTCCATCTGATAAAAGTGCTGCTTCAAACAAGGTTAATGCACAGTCACAGCCTGAAGATATTAGGAAAGGTCATGGAGCTTCAAATTCTAAACCGAAGG CTGAAGAGAATACTTATGTTAATTCTCCTTTGACAAATGATAACATACCTCATGGAAGCCGCTCCAAAAGGGGACAGCGAAGGAAAAGAAATAGGACAGA CAATCAAGATGTTGATTCTAAATCTGTGTCAAAATTAAAGGAAGGAAATTTGAATCCTCTGTTCGGAGAGACTGCTTCAAAATCTAATGGTGCTAGGATG GAAAAGGAGCCAGAATCTGGGAAGGATGCTGAAGCAAAACCTAAGACATCCATCAGAATCAAATTTCCTGCTAAAAAACATGATAAGAAAACTGTTTTGG CTCCTGAATTGGCAGTTGCTGACATGGAAACTAAGGATTCTTGTGAGAATAGAGAAGATTCCAAATCCTCAGTAAGGCGAAAGAGAAATCAAACCACGCC ATCTGAAACTCGTGAACTTGGTGACTCATTGGTCGGTAGTCGGATCAAGGTGTGGTGGCCAAAGGACAAAATGTTTTATGAAGGCGTTGTGGATTCGTAT GATCCTGTCAAAGGAAAGCATAAGATTCTGTATGCTGACGGTGAGGTGGAAATCTTAAACATGAAAAGGCAGCGCTGGGAGGTAATTGGTTCCGATGTTC CACCAGATGATGAACAAGGACATGCTCTTCATAAGCTTGCAGAGGCATCATATATAGCACAAAAAATCAAAGAAGAACCTGATTTGGAATCAGACAAGAG TAAAAGCATCAATGTCCGGTCCAGGGGTAGAACTTCTTCAAGCATCTCCAAATATTAATCTGCAAAATCTGCTATCAAATCTGTGGATTCTTCTTCTGCC GATAAACATCTGAATGATCTACCGAAAGCTGACGGTGTTAAAACCACTGGTGGGAAGCCTAAATCCACAAGAATGAAGACTGGTTATGTCTAGATTTGAA GGTTACATGTAACTAACTATTCTTAATGCATTGAATGTATGCAGTGTTTAGTAGTGCCAAGAGGTGGATTTAGAGCTTTTACTTTGGCTTTTCCATAGGA AACTATCAGTTTAGTCTCTTTTGGTTTCATATTTTATCTCAAGAACTTAGCATACAGGTCAAGCCTCCAAAACTCCTCTTTAGAATGGTTTGGTATATTA TGGAGTGAAAAACTATTTACTGCACTCCAAACCCATTTTTGAACATGGTTACTTGTATAAAATGACTTCAACTATTTGCAGTATATGGGTTAGTTTCATT CCTAAAA
• Tissue: pods
• Gene name: LI_gene_149191;
• Additional information: details;

Expression of Ll_transcript_372547

FPKM

• PAB: 0.1
• PNAB: 0.8
• PS1: 0.1
• PS2: 2.3
• PS3: 1
• PW1: 0
• PW2: 0.2
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_372547

• Blastp: DNA mismatch repair protein MSH6 from Arabidopsis with 44.83% of identity
• Blastx: DNA mismatch repair protein MSH6 from Arabidopsis with 44.83% of identity
• Eggnog: that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
• Kegg: Link to kegg annotations (AT4G02070)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019433673.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;