Id Trinity | TRINITY_DN47046_c0_g1_i13 |
---|---|
Name Transcript | Ll_transcript_370804 |
Sequence | CTAACTCTTGATATTACTCTAATTAATGGTTATAATATTGAGTTATCTATTTATGAATCAGAGATTAATCAAAGTGACGAGAAGAGAAGAAAAACAGAGT TTGAATTCGAATCAATCACACCAGAGGCACAAAATCGATTCGATTGAAGGAACGAATCAATAAAGCGGTTCCGATGGATGAAATATCTCCGGCGGATAGC GGCGGTGGTGGGAGGGTTTCTTCCGGGAAGGAGCAACAAGCCGCCGGCGTCGGAATCCTTCTTCAGATAATGATGTTAGTCTTGTCCTTCGTTCTAGGTC ACGTTCTTCGTCGCAAAAAGATTTACATCATTCCTGAAGCTAGTGCTTCTCTTCTCATTGGTATCATCACAATTTTTCCTTCTATTTCTTTCATTTATTC CTCATCTTATAAGGTTTGAACCTAATTTCTATGTTTTTTGTGTGTTTCTTTTACCTTTAGGTTTAATTGTTGGTATACTAGCTAATATATCAGACACTGA AAATAGCATCAGGGCATGGTTCAATTTTCATGAGGAATTCTTCTTCCTCTTCCTCTTACCACCCATCATATTATATCCTTATTGTTTTTATTTTATTTAT TTACGAGTTTAATATCTATGCAATATTGATGAATATTTTTACACTTTCATTGCATCATCCATCGTTTTGTAAAGTTATTTATGAATGAGAGAGAATCAAT TTACTCAAAGAGTAAGTTCATCTTAGCCATTAATTGTAGAGAAATCCAATGGTTGAATTAGTGAGTCTGTTGGATTTCCAATGAATTGAAGGCTAAGATG AGGAGTAAGTGTTACTCTTAGAGTAAACTTATCCCTTCTCTTCCATCAATACATAGATATTAACCTCTTTATTTATTTATTGTATTTTGTATTTAATTCA TTGATTAATTATTGCCAATTTGCCATCAAGTTATGTGGGTTGAGTGCATTTCCTTGACTGCTCAATTTACTCAGTCTGGGTTTAGTTTAGCACCTGTAAG TTCATCTACTTCCTCCATGTACTTTTATATTTGTTTTTAATAATTGTTCGCTTCTCCCACATATTGGGACTAAGGCTTCATTGTTGTTGTTCTTTTAATA TTTGTTTTGTTTGATTGGGAAATGATACTTGCCGACTTGAGGTTTAATTAATCCCATTCCATGTCCATCTTGTTTTAGAATTTACTATCATCGCACTTAC CTTCCCCCGAAGGGGTGATGATTGAAATTATACTGGTCTCCCCAAATGGGAGGTTACTGTAGGGTAGAGATTGTGATTAAGGCAAACCTCAAAAGGAGCT GAAGTCAGTGTAATTTACACTTGTTCTTTTCAACATCCCTTTTGACTTGGTTATATTATATGATCTTTGACAGAAACCTTTCTTCTCAAACTTTGGAGCA ATTGTCACATTTGCTATCTTCGGTACCTTTGTATCTTCAATCGTGACCGGTGTCTTAGTTTATCTTGGTGGCTTGATATACCTCATGTATAGACTACCCT TAGTTGAGTGCCTAATGTTTGGTGCTCTTATATCAGCAACTGATCCTGTTACTGTTTTGTCCATATTTCAGGAGCTTGGCACTGATGTCAATCTATATGC CTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCAATTTCTTTGTACAGGACGATGTCAATGGTTAAAGCTGATCCATCTGGACAAAATTTATTC ATGGTGGTTATTAGGTTTTTGGAGACTTTTTTTGGGTCAATGTCTGCAGGTGTTGGAGTTGGATTTACATCTGCTTTAATATCCTTTTAAATCCATTATT GTCCAATATATTTGCAGTATAAATCTTTAGCAGTTTGAAAGTCAAAATTATTGCGAAACCTTAACTGTCCAAACCTATTTAAGTATGCAGGGCTGGATAT TGACAAGTAAGCATTTAGTATTACATGTTTATTTGGTGATAATTGATAATTCACACCACATGTAAAAATACTTCTAAAAAATAATTTCTTGTTCCATTCA GTCTTCAGAATTTGGAGAGCTGTCTATTTGTTCTTTTCCCATATTTCTCGTACATGCTTGCAGAAGGTCTCGGTCTGTCTGGTATTGTATCAATACTGTT CACAGGAATTGTCATGAAGCATTATTCGTATTCAAATTTGTCACAAAGTTCACAAAGATTTGCCTCTGCATTTTTTGAGTTGATATCATCATTAGCAGAG ACATTTGTATTCATATACATGGGATTTGATATTGCTATGGAGCAGCATAGCTGGTCACATGTTGGATTTATATTCTTCTCGATTATATTCATTGGAATTG CAAGGGCAGCTAATGTCTTCTCTTGTGCTTATCTGGTCAATCTGGTCAGACCTTCAAACCGAAAGATACCTCGAAAACACCAAAAAGCACTTTGGTATAG TGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAGTTCATGATCTTCCTGAAGGACATGGACAGACCATCTTGACTGCAACTACAGCAATA GTTGTTTTGACAGTATTACTGATTGGCGGTTCTACGGGTACCATGCTGGAAGCTCTAGATGTTGTAGGGGGTGACAGTCATAGTGATAGCCCTTTGGCCT CAGTGGGTACCATCACAAATTACGAGGAAAACAATGGCTATGTTGCCCCTTCTTATGAAGAAGAGTCATCATCAGGGAGCAAAATCAAGATGAAACTAAA AGAATTCCACAGGAGTGCCACATCTTTTACTGCATTAGATAAAAACTACCTCACCCCATTCTTTACAAGCCAAAATGGAGATGAAGAAGATGAAGGTAAA TTTTAATAAATAAAAAAAGGGCGGCCCAAGTGTACAAGGTGAAGGTAAAGTTTGCCGTAGTTTTTATTTAAAATTGTGTTATTGTCTTTGAGAAATTAAT TAAGTAGATAAGTATTGAGAATTGAGTATTGCTACCCGGCTCTGTTCTCTTTTAAATGGGTTGTCTTTATTCAACTTTAATAACCCCGGAAGACAACTGT TTTAAATGGCTTCTAACTAATGCACCAAACTTAGTCTGCCTTTTGATGGTCACTCTCAAACGTATGAACTACCCAATATTGGAATCAGATATTTCTTGGA TCTTTTTTATTTCGTTTTATTTGCGTATGCTTCTTATTAATCAGTACTTCAAAATGTTCAAACCTGAAGAAAATTAATTGACTGATAAAGTTCAAACTTC AAAGTCTTGTTGAAGAATTTGAAGTTTCGTCTATGGTTACTATCTCATTTTCATGTATTTTGGTCATTTTCTTTAGGCTTGAGAAAAACTTCAGTTTTGT AGAAAGGCTTGTCTTGGGGGTGCTTTTGTACTTACAGTTTCTTTGACCCATAAAGTACCTTGAGTGTACTCAGATAGCTTCATAATTTGCTTGTCCATTA TTGGCTTGCAACTTTTCACGAATATTTATACTGATATACCTGTTATTTTATTTCTGATCTTGGGCTCCTATTAGACATGAACTTTGTGAATTAGTTTTTT GCTTCAGTGTGAAGTAATTTTGTTTTAAAATTGTATTTCTGCAATTTGTTTTTCTTGGTCTTAGCAGTGTTGCCTTTGGCTTCTT BLAST |
Tissue | pods |
Gene name | LI_gene_149266; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_370804
Blastp | Sodium/hydrogen exchanger 6 from Arabidopsis with 76.8% of identity |
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Blastx | Sodium/hydrogen exchanger 6 from Arabidopsis with 77.61% of identity |
Eggnog | Sodium hydrogen exchanger(COG0025) |
Kegg | Link to kegg annotations (AT1G79610) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019426014.1) |
Pfam | Sodium/hydrogen exchanger family (PF00999.20) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |