| Id Trinity | TRINITY_DN47050_c4_g8_i4 |
|---|---|
| Name Transcript | Ll_transcript_373136 |
| Sequence | ATACAAATCAACTTTTGTTTCACACAAAAGTTATGTGAAGGGTTTCATTCCGTTGTTTCTTATAATTAGTTTCTTATATATAAGACATATTTGTCTTTAC ATCAACTTAACTTAATCCTATAGTTATGTCTTCTCAAGTACGTGATCAACAGTGCCGTAGCTTACACTTTTTCAAGGTTATTCTTGAAAGCAACATTCGA GATGGAGAACTGGTATACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATATGCAGAGTGGGTCGATCTTTTTTGGCATAACCTGTAGGAGTATAGTA ATATGGGAATGTTTCAGGTTATTAGGTTTTCACATAAATCTAGTTCATAACTATTTTAGTCATACCAAATGAAATAGTAGATATATTAATTAACCCTGTA TCGCATTTTTTGTTGTCTATATTTGATTTTTATACAGTATTAGGGAGAAAGTAGTGTTGTTACTATTTTTGTATGTTTTTTAAATTTTGATTTATAGTAA TTATTGACAATTGTGGAAAAATGCGGCTGATGAAATCGCTACAATGAAATTGTAGATTTCCAGAACCATGTTTTTGCGGTCACTATTAAGAGGGTGCCAA AAGTTTTTGTGAAGAGATGCTGGCAAGAAATAACAAATCCAGTTTTTCTAAGGCTTCCAAATGGCACTGAAAGGAGAGTTTATTGGATTAAAAAAGATGG TGATGTTTGGTTTTCCAATGGTTGGAAAGAATTTGCACAATACTTGTCATTGGAAGTGTCACAGTTTCTGGTGTTTCGATATGAAGGAAAATCTCGATTC CATGTTATCGTATTTGGAAAAAGCGCATTAGAAATAAAGTACCCTATACCAGAAGATGAAGAGGTTAGCAATGACAGTGATTACTCCTTGAAAATTATTG ATGATTTTGATATGATTAACTGTAAAAGGCACAAATCTCCAAAACCATTTTCTCAAGCTCCTAAGAAGATGAAAATCAACCCAAAGGAAGAACATGAATA CTATTCCAGCCATGCTAAAACTAGGCTTGAGAAGTGGAAATCCCATAATGCAGGTCTTAGTAATGCTAAGAACAATGGGGAAAGTAGCAGAGATCTTGGT GAGAGAATCAATGCTTTCCACAAGCAAGTGAACCAAATTTTCTACTCTGAGAATTGTTGGTTTGCATGTACACTACAGAAAACATACCTACAAAGAGATT TCTTGGCCCTACCAAAAGATTTTGCTAGAACAAATCTGCAGAAGAAGGAAGGAGAAGCTACCCTTTCTTTCATGAAGGATGGTAAGGGCAGAACCTGGGA TGTGATGATAAAGCACTATTCCTGCAATAAACAATCAGCATTTATTAGTGGTTGGATTAATTTTGTGGAGGACAATAATTTGAAAATAGGTGATGTTTGT GTCTTTGTGCTAAACAAGTGCAAGAAACTTTCATTCCAAGTTGTTATTTTTCCTTTTGAAGATGACTCCACCCTTCCCAAATTTGCAGAGCAAAAAGGAC TTTCTATCATGCCTTCTTCATGCCTTGAAGTCCCTGAAACTCCCAAAGCTAATATATTAGTGTCATCCATTAATCACTTCACCATCTACATCAAGGACGG TTCATATCTTACGTCAATACCAATGAGCTTCATGAGGAATTACCATACACTTGGTGGGAAAAAAGCAAAGTTGAGAGTTGGGAAGAGAACATGGGATGTA AAAGTGCAATATTATCAAACTAGAAGCTTTGCTAGATTCACTGATGGTTGGCGTGATTTTGCTAAGGAATGTAACTTGAATGTGGGTGATTCTTGTCGAT TTCAGATTATAGATCAGGAGAATTTTGAGCTCAGTGTTTCAATTATGAAACATAACCACTAAATTCTAAGTTTCATTTTATATACTCTTTCCTTGTGTTC TTTGTTAATTATTATGAATCCTCTTAACTTTTTTTCCTTCACTTTCATATAGACTATTTCAATTAAATTGTTTCCTTAAAATCCCTTTAAGTTATGTTTT CTAATGGGTCAGAGAAGTTGATGTTTTTTCATGAACAGTATATATTCAGTAAGAATTAACCGTATGCATTCATTATTTAATGACTGAAGGATAAATTATT T BLAST |
| Tissue | pods |
| Gene name | LI_gene_149314; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_373136
| Blastp | B3 domain-containing protein Os03g0620400 from Oryza sativa with 23.46% of identity |
|---|---|
| Blastx | B3 domain-containing transcription factor VRN1 from Arabidopsis with 26.53% of identity |
| Eggnog | transcription, DNA-dependent(ENOG41104G8) |
| Kegg | Link to kegg annotations (4333466) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423704.1) |
| Pfam | B3 DNA binding domain (PF02362.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |