| Id Trinity | TRINITY_DN47079_c3_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_371155 |
| Sequence | TTAATAAACTAGGTTGTTACTTCCTCTCTATATGTTTCAGTGTTTTGTTATTTGTTCTCAAAGTGTGAGAGATTTTTGCGCTCTTGTTTCTTCTGGTTTT CTTTCCTTCACTGCTTAAAGCTACAACAGTTGCGGCAACAGAAGAGGAAGATAAACTCAGAAACATAGACTCATAGATAGTAACTCTTAAGAGCTATAGT TACAGAAATTTCTGTGATTTCAATCACAAAGAGAAAGGAAAAGTGGAGTAGAATAGAGTAGGTGATAGACCGCAGAATCTTACAGAGTCACACAAAAAAA AGAACACACTTGGTTTGTGTTTTTTGTGTGTTCACTTTTCATTCGTTTGTTGTGTTTTTTTTTGCTTTATGTTCTGTTGTTTTGTGCGGTCTATCTAACC CCCTTTTACTCTTCTATTCACTTCTCACCCCTTCAAGTTTCAATTTTTCTTTCATTTTTCGATACCCCATTATGTTTTTTCAATCAAAGTTTGTGTTTTT AGCTTAATCAAATCAAGGGTCCATTGTATTTTCTTTTTTTCACTACCCCATTTTTGTTTTTTGGTAAAAGTTTTTGTTTTTAGCATAATCAAATCAAAGG GGGTGTTGTTGTGGCCATGGATGGTGTGAATAATAGTAATAATATTAGGGTTTGTCCTAATGGTGATGACCCAGTTGTTGGTGATGGTTCTTATTGGGTG GATGCATGTGATGATTTCATTGATTTTGATGTTTCATCAATTGTTGTCACATCCTCTTGTCCAGACCAGCCTGATAACTCTTCCAATCAAGATTTCTTTG GTGGTATTGATCAAATCCTAGATAGTATCAAAAACGGATGTGGCCTCCCACTTGATGATAATGTTGTTGATGTTGTTGTTCACTCTGATTCCAATTCCAA TCTTACTGTACCAATATCAACAACACCAACACCATTGTTATCTAATGATGCCTCTTCCAAGTTACAGTCCTTGACCTCAAGTGAAGATGGTTTTGTTAAG AATAATGGATTATCGGTTGGAGAGAAACATGGTAGTGATGAGATTAATGGGTGTAATAAGGTGTTAAACGGCGATGAAGGGGGGATTGTGGTTGGTTATT CTGAGGAGGGTAGAGGTTTAAATAGATGCCGCGATTTGGTAAAGGAACATGATGTTGATGGCGGCGAAGAAAGGTACAGCAAAAGGGCCAGACTTGGGAA CTATAAAAATGAGAGACATTATTCTGGTAGAGTGAATTATCAAGCCAAGGAGAGGGATAGGTGTTTGAGTAGGAAGAGACCACGCGATAGGGATGAGATT GATAGGAGGGAGAGGGATAAAGATGGTGTTAGGAAAAGAGAACATTGTGGTGCAAGGAGAGATGTTAGGGATAGGGATTGGAGGGATAGAGAATCAAGGG GTTATTGGGAGAGGGACAAGTCAGGCACCAATGATATGGTCTTTCGCACGGGCAGTTGGGAGGCCGATCGTACCCGAGAAGAGAATATGGCGAATGATGC GAAGCAGGAAAGTAATGTAAAGGTTGAGAAGACAGACGAGGAGACTAAGGAGAAGGCTAAGGAGAAGGTTCCTGAGGAAAAAGCTAGACAGTATCAGTTG GATGTTCTTGAGCAGGCAAAGAATAAAAACACTATAGCTTTTCTTGAAACTGGAGCAGGGAAGACCCTAATTGCTGTTCTTCTAATTAGAAGTATACATG AGAGTTTACAAAATCAAAACAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAGGTTCCACTTGTTTATCAGCAAGCAGAAGTGATTCGTGAGCGGACTGG TTATCACGTTGGCCACTATTGTGGAGAAATGGGACAGGATTTTTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACAGCAAACATGTTTTAGTCATGACT GCTCAAATTCTTTTGAACATTTTGAGACATAGCATAATAAAAATGGAAGGAATCAATCTCTTGATTCTCGATGAGTGCCATCACGCTGTGAAGAAGCATC CATACTCACTGGTGATGTCTGAGTTCTACCATACTACACCCAAAGAGAAGAGGCCAACTGTATTTGGAATGACTGCTTCCCCTGTTAATTTGAAAGGTGT CTCTAGCCAAGTAGATTGTGCAATAAAAATCCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGCAAGGAGCTGGAGAAACAT GTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGACAAAGCGGCCAGTTTATGTTATCTACATGAACAGATAAAGCAGATGGAGCTTGAAGTTGAAGAAG CTGCGAAGTCTAGTTCAAGAAAAAGTAAATGGCAGTTTATGGGGGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATACGGTGTTTCTGAAAG AACGGAAAGTGATGGAGCTGCAAACCTAATACAGAAATTGAGAGCTATCAATTATGCACTTGGTGAACTGGGGCAGTGGTGTGCATATAAGGTTGCACAA GCCTTTTTAGCAGCTTTGCAAAATGACGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTTAGCAAAGTTGTCTCTCTTCTGAAAT GTCAACTTTCAGAGGGTGCAGCTTCAGACAAAAATGCTGGAGTTGATGACTCAGAGTGTGGTGCGGTTCAGCAAAGTGGATCTGAGCCTGAAGAGATCGA AGAAGGAGAGCTTCTAGACAGTCATGTTGTCTCTGGCGGGGAACACGTGGATGTCATAATAGGAGCTGCTGTCGCTGATGGCAAGGTGACCCCCAAGGTG CAGGCGCTGATCAAAATACTTCTCAAGTATCAGCATACTTCTGACTTCCGAGCAATTATCTTTGTTGAGCGTGTTGTGTCTGCGTTAGTTCTACCCAAGG TCTTCGATGAGCTTCCATCTCTTGGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACTCACCAAATGCAGGATACAAT TGCTAAGTTCCGTGATGGGCGGGTTACATTGTTAGTTGCAACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGAT CTTGCGAAGACTGTTCTGGCATACATTCAGTCCAGGGGCCGTGCTAGAAAGCCTGGGTCTGATTACATTCTGATGGTTGAGAGGGGAAATTTGTCACATG AAGCATTTCTAAAGAATGCCAGGAACAGTGAGGAGACATTGCGCAAAGAAGCAATACAGAGAACAGACCTTAGTCACCTGAAAGATACTTCAAGGTTAAT AACAGTAGAAACCCGGCCCGGATCGGTTTACCAGGTGGAGTCAACTGGTGCAGTCGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTTTTCTGCTCT CAGCTGCCTAGTGACAGGTATTCGATCCTTCGTCCCGAGTTTATTATGGAGAAGCATGAGAAAGAAGGAGGTCATACTGAATATTCTTGCAAGCTTCAAC TGCCGTGTAATGCGCCATTTGAAAATCTTGAGGGTCCTATCTGCTGTTCGATGCGATTGGCACAACAGACTGTTTGTCTGGCCGCTTGCAAGAAACTACA TGAGATGGGAGCATTCACTGACATGCTACTGCCTGATAAAGGAAGTGGAGGAGAAAAAGAAAAGACTGAGCAAAATGATGAAGACGAACCACTTCCAGGG ACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTTGCTGACATACTAAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAAAGACACCAAAGTGC TGTATCTTTGTATGTATGCCTTGAAGTGTGAAAATGTAGGCGATTCGAAGGATCCGTTCTTGACTCAAGTTTCAGAGTTTGCAGTACTGTTTGGCAATGA GCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTAACTACAAAGGCATCTCTTGTCTTTAGAGGGATGGTAGATATCACC GAGAGTCAGTTGGCGTCCCTGAAAAGCTTTCATGTAAGGTTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTTCAA AAGCATATTTGTTTGTCCCAATGGTTGGCGATAATTCTGTAGATCCGGTGAAACAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCAAATGCATG GAAAAATCCATTGCAAAGAGCTCGACCGGATGTTTACCTTGGTACTAATGAGAGAACTTTAGGGGGAGACAGAAGGGAGTATGGATTTGGGAAATTACGT CATGGCATGGCCTTCGGTCAAAAGTCACATCCAACCTATGGAATCAGAGGAGCGGTGGCCCAGTTCGATGTGGTGAAGGCTTCAGGATTAGTTCCTGACA GAGATGCCTTGCAAAAACAAAAGAATAATATCAATTTGACTAGCAAAGGAAAATTGATGATGGCGGATACCTGTGCTGATGCAGAGGATCTAGTAGGAAA AATTGTAACTGCTGCTCACTCCGGGAAGAGGTTTTACGTTGATTCAATACGCTATGAAATGTCCGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTT GGTCCTCTAGAGTACAGTTCATATGCCGATTACTACAAGCAAAAGTATGATGTCCATTCTCTTAGATTATAATAGTCTTCCTTTTCATTTTCTGTCTTGA AACTTCTTATCGTTAACTTGCTAGCCGTGTTGCACCTCCAATGTTGTACAGGAAGAACAAGGAGCTAATCTTTAATCTGTGAAGGAACCTTTTATTGCCA CCTCTTAATTATATGGGATTTATCAGTGTGTCCCATGTAGGTGACAATAGCTTGACGGATCCTTCTAGATTAGAGAAGCTTCTTGTCTCTTCTTGTGCAA CGAAGGGTGCATATGGCTACTTTATTGCATTGGTGTAGGTATGGAGTTGAATTGATTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACT GCAAGAATCTTCTGTCTCCTCGATTTGAACACGGTGAAGCAAATGAAGGTGAATCTGATGAGGCTCATGACAAAACTTATTACGTTTTCCTTCCTCCTGA GCTATGCCTACTACACCCACTGCCGGGATCACTTGTTCGTGGTGCTCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTTCTTGCGGTTCAG CTGAGGGATATGATAAATTATCCTGTCAAGGCTTCAACGATCTTGGAAGCCTTGACCGCAGCATCTTGCCAAGAGACATTCTGCTATGAAAGAGCTGAGC TTCTTGGTGATGCTTACTTGAAATGGGTCGTTAGTCGGTTTCTTTTCCTAAAATATCCCCAGAAACACGAAGGCCAGCTTACAAGGATGAGGCAACAGAT GGTCAGCAACATGGTATTGTATCATTTTGCATTAAGTAAAGGGCTCCAATCGTATATTCAAGCAGATCGCTTCGCCCCATCCAGATGGGCAGCTCCCGGA GTGCTACCTGTCTTCGATGAGGATACCAAGGATGGGGAGTCATCTTTATTTGACCAAGAGAAATCCATTTCCAAGACCGAGAAGATGGATTCTCACACTG ATGGATATGAGGATGAAATGGAAGATGGTGAACTTGAGAGTGATTCAAGTTCATACAGAGTTCTGTCCAGCAAAACACTCGCAGATGTTGTGGAAGCACT GATCGGTGTGTATTATGTTGAAGGTGGTAAGACTGCTGCTAACCACTTCATGAGCTGGATTGGCATTCAGATAGAGTTTGATCCTGATGAGATTGAATGT GCAAGAAATCAATTTAGTATTCCAGAGGGCATACTAAGGAGTGTTGATTTTGATGGTTTAGAAGGTGCTTTGAATATCAAGTTTAAGGATAAGGGTCTGC TTATAGAAGCCATAACTCATGCCTCCAGACCATCGTCAGGAGTATCCTGTTATCAGCGGCTGGAGTTTGTCGGTGATGCAGTGCTGGACCATCTTATTAC CAAGCATTTGTTTTTCACTTACACAAATCTCCCACCAGGACGTCTCACTGACCTTCGTGCTGCTGCTGTCAACAATGAAAATTTCGCACGTGTTGCAGTT AAACACAATCTCCATGTCCATCTCCGACATGGTTCCAGTGCCCTAGAAAAACAGATTAGAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAGCCAG GGTTTAACTCCTTTGGTCTCGGAGATTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAGTCTATTGCTGGTGCCATCTTTCTTGACAATGGGAGGGA CACTACTTCTGTTTGGAAGGTTAGTGCCTAGCTTTAAAACCTAAACCATCTCCACATAATTTTTTAGTTTAATTTTGATGCACTGTCAGCATAACGTTTT TCACGCCGTGTAACTCTCGAGCTATTGTTATGAAAGTCAAATATTTTCAATGACATGACAATACATTACATGATTGGCTGACAGTATAAAAATGTTTTAT ACCGACACAGCATTAAAATTAAATCCATATTTTTATCCAAAATTGACGTAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_149608; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_371155
| Blastp | Endoribonuclease Dicer homolog 1 from Arabidopsis with 69.72% of identity |
|---|---|
| Blastx | Endoribonuclease Dicer homolog 1 from Arabidopsis with 68.82% of identity |
| Eggnog | Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Also processes some mRNAs, and tRNAs when they are encoded in the rRNA operon (By similarity)(COG0571) |
| Kegg | Link to kegg annotations (AT1G01040) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432885.1) |
| Pfam | Type III restriction enzyme, res subunit (PF04851.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |