| Id Trinity | TRINITY_DN47082_c1_g2_i8 |
|---|---|
| Name Transcript | Ll_transcript_371742 |
| Sequence | AAATAAACGGATAATGTGGCTTTTCAGTATCCATTACTAGCTAAAGTTTTTCCCTTCTTCTCTCCTCTCTCACCAAGTTTCTAACTTCTAACTTTGCTGT GGTTGGTTTTATCCGAGTCTTCCAGAGAGAGAAACAGAAAACATGCTTCGGAGAGATCTAGAAAGTGGTGTTGAAACAAAGGACAACAGAGCACTGAACA ACAGCAATTTCAACAATTACTCTGCTGCTCCTAACTCTTATGTTTATGATCCAGAAACCCATTGGACTTCATGGCTTGTACCTGTGTTTGTGTTGGCAAA TGTTGTTGTTTTCATTGTTGCTATGTACATCAATAATTGTCCCACCAAAAATCAAGGTGATTGTGTGGCCAAGTTTCTGCATAGGTTCTCCTTTCAGCCT CTGTCTGAGAATCCATTGTTTGGACCCTCTTCCTTAACGTAAGAGCTAGGAACTCAATTTCTGCTTCTTTTTTTTTTACTTTGATACTATGTTTAGTTTC TTTCCTTTATTGATTTTTATGATTTTGATATTGCTTTTATTTATGATCTCATTCCTTAGCCTAATCAAGTACTTCAGTGGTGTGGAATTACTGGTTCTGA TTTTGTTTTAGCTTATTGAGGTGCTGCAATGGAAATTTGGTTAATTTAGTGAATTGGGAGTTTCTTTTTTCTTTCTTCCCTATCTGATCTACATGTATAT CTGGCTTTGTTTTTTGAGGTCAACGTTCTAGCACTTGAGTTTGTTGATACTAAGAAATTAATTTGAAGTATTCACTTCTTTGTTAATACTTAGAGTTTCT TTTTATTGTACAATCCTTATTTCTCACCCCTCTAATGAACATGCTTATACCCTTTAAATTAATAGGATTTTAAATACTAAATTTCGTTTTTGATATTTCC AATTGTGTAAGTTGCAGCTCTTCGCATCAACTCTTCACTAGTAATACTACTGCAATATAGATTGTTGAATACAGTTTAATGATTAAAATTATTTTGTTGA CTATTGAAGATTAACAAAGATGGGAGCCCTCCAGTGGGATAGTGTTGTGAATCATCGTCAGGGATGGAGACTTATTACTTGCATTTGGTTACATGCCGGA CTTATTCACTTAGCTGCAAACATGTTTAGTCTGATCTTCATCGGCATTCGCCTTGAACAGCAATTTGGATTTGTGAGAATAGGCATCATCTACCTTTTGT CTGGATTTGGTGGCAGTGTGTTGTCTTCTCTATTTATTAGAAACAACATATCTGTTGGTGCTTCTGGTGCGCTTTTCGGACTTCTTGGAGCAATGCTTTC TGAACTGATCACAAATTGGACTATTTATTCCAACAAGGCAGCGGCTTTGCTCACACTCTTGGTTATTGTTGTCATCAACTTGGCCATTGGGATATTGCCA CATATTGATAATTTTGCTCATATCGGGGGATTCCTAACAGGACTTCTTCTTGGTTTTATTTTGTTAGCCCGTCCTCAATATGGGTGGTTAGAGCAGCGGC ATCTTCCTGCTGGTGTTCGGCGGAAGTCTAAGTTCAAGGCTTACCAATACACACTATGGATTGTCTCTCTTGTTCTATTGGTTGCTGGGTTAGTTCCTTC CTTTCTAAGATTCTCTTATGCAGTAGTATTGTTTTGATGAAGTTGCTTTTGATAGAGGAGACGAAATTTTGTTAATTTTATATATGGTTATTGTATAAAC TAAAATTTAGAGGTTTTGTAACTTCTCATGGTCTATTATTGCAAATGTATGGATAACTTACTAGTTTTTCTGGTTATAACAAAGTAGATGTTGTTTCTAA TCAAAGAATTCATATGTTGAATGGCAGGTTAGTGATTGCTTCTGTGATGCTATTCCGGGGTGAGAATGGTTATGATCACTGTCATTGGTGTCACTACCTA TCGTGTGTTCCAACTTCTAAATGGAAATGTGATGACAGTTAAACAAAAAGGCATGAGCTATTCATGTTCCATGTAAACTATAGCTGTTACAAACTAGGTT GTTATATTACTTTTTTTCTTTGCTAAGTTTTTAAAAAAAAAACAGATATTGGTTTGTCTTTGTGGATTTATGTGTATATGTATGTTTTCTTTCATATATA TATAAAGAAATATTGAAATCACTGGTTTTCCTTGATATACCATGTAAACCTGCTTAGTCCATATTGTAATAAGTTCTGAAAGCATTGCCAAGTCCAAAAG CAGTACAAGAAATGTCTAAAAAATAGAGCAGAAAGCAACAACTAAAAAGGGTGGTCCAATCTAGGAGGTTCCACTTAGTGGGATATGTGGAGAGTACAGA TATAGACTTATACATAACTTAGCAATCGAATGTTGAGAGTAATATTTATCCATGGGATAGGCAGTGTAAAAATTTATAGATAGTCAGTGCATTATACACC ATTCATTTGGATTACTTTTGTTGAAAAGTCAAGAATGATTGAAATAAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_149622; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_371742
| Blastp | RHOMBOID-like protein 3 from Arabidopsis with 75% of identity |
|---|---|
| Blastx | RHOMBOID-like protein 3 from Arabidopsis with 74.87% of identity |
| Eggnog | rhomboid family(COG0705) |
| Kegg | Link to kegg annotations (AT5G07250) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449627.1) |
| Pfam | Rhomboid family (PF01694.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |