Ll_transcript_310349

• Id Trinity: TRINITY_DN47139_c6_g1_i1
• Name Transcript: Ll_transcript_310349
• Sequence: GTGAACCCTACAATATCTCCACCATCCTTCCGCCGTCGAAACCCATCTTCCTCTGCTTCCGCCGTGAAATCGAAATGTTGATGAGCCAAATTGGTTTCGG TGTGAAGTTTGGGAATTGGAGATGCTACGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCAAAGTGAAGTTGCTGTTGTTGAAGGTGGTAATGGCAGA ATCTCAGAACGCCAACATATCCGTCTCGGTTTACCTAGCAAAGGTCGCATGGCCACTGACACCACCGACCTCCTCAAAAATTGTCAGTTATCTGTTAAAC AAGTCAATCCTAGACAGTATGTTGCTCAAATTCCTGAGCTCTCCAATTTTGAAGTATGGTTTCAGAGACCAAAAGATATTGTAAAAAAATTGGGATCTGG TGATCTTGACCTTGGTATTGTTGGTCTTGATACTTTCACTGAACATGGGCAGGGGAATGAAGATCTTATCATTGTTCATGAAGCTTTGGCCTATGGTGAT TGTCGTTTATCACTTGCGATTCCTCAATATGGAATATTTGAAAATATAAATTCACTGGAGGAGCTAGCTAAGATGCCTCAATGGACAGAATCAAAACCTT TGCGAGTTGCTACTGGATTCACCTATTTGGGTCCTAAATTTATGAAAGACAACGGTCTTAAGCACGTGACATTTTCAACTGCTGACGGAGCTCTGGAGGC AGCTCCTGCGGTGAGAGATAATTTCTTTTTATTAGGACTTGTTCATCTAAGTTTTCTATTTGACTCATTTCTTAATTACATCATTGACCCATATCATAGA GATTCGACAAAGTTTTACGTTAGCTGTTTAATGCGACATTCACATTTTATCTTATCCTTTTAGGACTGACTATGTATAACATCAAACACATGTAAGTTTG TTTGCTCTTTCTTATTGAAATTTGAAGAAAAAAAACTTAGGGGGTTCTAGTTGTGATATCTATACTGTAATCTTTAGTCAAGATTTGAGCCAAGTCTTCC TGAAAACATTGGATTTTGTTGAATTTTTATCATCTTTCCTCACGAAGCCTTTTCCATTTTATTCTTTTGCTATATCTTTTTGGTCTTTGCACCTATATCA ATTTCTTTTATATCCATTTTAGCAATGCTGCTGTCATATGCATGACATGATATATATGTAGATAATTATATTGATCTTGCATTATTTAGATGGGGATAGC CGATGCTATCTTGGACCTTGTGAGTAGTGGTACCACACTAAGAGAAAACAACTTGAAGGAAATTGAAGGCGGAACTGTGTTGGAAAGCCAGGCTGTTCTT GTTGCAAGCAGGAAATCATTGGTCCAACGTAAAGGAGTACTAGACACAACACATGAGATTCTTGAAAGATTGGAGGCACATCTGAGGGCCATAGGGCAGT TCACGGTTACTGCAAACATGAGGGGAAGGAGTGATAAGGAAGTGGCTGAGAGAGTAGTGAGTCATCCATCATTATGTGGGTTGCAGGGACCCACTGTCAG TCCTGTTTTCGGCCCAGATGGGGAAGTAAAACACTACGCCATAGTCATATGTGTGCCCAAGAAGGCGTTATACAAGTCTATGAAACAACTCAGAGCGATT GGAGGCAGTGGAGTTCTTGTATCACCCTTGACCTATATTTTTGATGAGGAAACTCCAAGATGGCGTAGACTCCTTTCTACTCTTGGGATGTAAAATATTC CATAATATTTATTATTGTATTTTGGTATTGGCCTATAAATAGGACCAATCTTTTGTACTTTTGTATTAACTTCACGTCTATCGGAATAATATTAGTCGGT GTAAGGAGTTGGTCTAGGGATGCAAGACTTTGTTGGATTCCCAAGTATCTAGCAATCAATACTTGTTGGATGAGACAATAACATACCAAGTTTAATAAGA ATGGTGATTAGATAATATGGGATACATGCTTTGGTGCATGATACTCTATGTGGTTCTTCAATTTTTACATGTTATAAGACTTTCTTTTACGAGGGTATGG CTACTATAGTCATGATTCACAGTGATTCAT
• Tissue: pods
• Gene name: LI_gene_150112;
• Additional information: details;

Expression of Ll_transcript_310349

FPKM

• PAB: 0.1
• PNAB: 0
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0.1
• PW2: 0.3
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_310349

• Blastp: ATP phosphoribosyltransferase 2, chloroplastic from Arabidopsis with 72.38% of identity
• Blastx: ATP phosphoribosyltransferase 2, chloroplastic from Arabidopsis with 76.56% of identity
• Eggnog: Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity (By similarity)(COG0040)
• Kegg: Link to kegg annotations (AT1G09795)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019443309.1)
• Pfam: ATP phosphoribosyltransferase (PF01634.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;