| Id Trinity | TRINITY_DN47141_c4_g6_i2 |
|---|---|
| Name Transcript | Ll_transcript_309838 |
| Sequence | CTTTTACTTAATTTTTCTATCGATTATTGATTTATCAAATTCCCCTCTCTTTTTTCAATAGAATTACAGTTTCGTTGTCATTGCTCTTTTCCTTCGATCT TCTTCATGTAGAGTATAGAGTGTGGATTAAACCCTAATTTCAGAAACCAAATTGATAAAGAAGAGAAACAAAACTGTACTCAAATATTTGCTTTTTCGCT TTGAATCCGAGCCATACTGTGCAAAGGTGAAAGCTTCAACCACGATGCAGAAAGGCTGAGGGTGTGTTTGCTGCCAAGTGCCAAGAGGTCACGGTTCAAA TCCCGGTAACAACTTGTTTGCGGGTAAGACTGCATACATCTACCATCGTGTACCATGCTAGGTGGGAGCCTCATGCACTGAGCTGCCCAACCATAACAAT TTATATTATCCATGTACCTACAGGACTATTGTGACAAACCCTTATATGTTTCGCCTGAGCAGTATCTTTCCTCATGTAAATCATTTGTTTGAAAGAGAAT TTTGATCTGAATGTTGCTGCAATAATTATGGATTCTTCTGCTCTCATGGGTAGTACAATTTTGGAACCTTCTGCCGATTTGGAATTTGAATCTCATGAAG CTGCTTATGCATTCTACAAAGAATATGCTAAGTCTGCAGGATTTGGTACTGCCAAGTTGAGCAGTCGTCGGTCTAGGGCGTCGAAGGAATTTATTGATGC CAAATTTTCATGTATAAGATATGGTAATAAGCAACAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGTAAGGCAAGTATGCATGTG AAGAGAAGACAAGATGGTAAATGGTATGTCTATAGCTTTGTGAAGGAGCATAATCATGAGCTTTTACCTGCTCAAGCTCATTTTTTTCGTAGTCACAGGA GTTCTGATCCACTAAGTAATGATGTTCGGATGCGAAGGCGGAAGAACTCAACTGGAGTTTCTAAGCTATTTAGTGCATATCAAAATGTTGATTGTTTAGA GAACTTTATGAAACATCATGATAAAGGGCGAAGTTTGGTTTTAGAAGCAGGGCATGCCCAACTGCTTCTTGAACTCTTCATGCACATGCAGGAAGAGAAT CCAAAATTCTTCTATGCAGTTGACTTGAATGAAGAGCATCGACTTAGAAATGTATTCTGGCTTGATGCTAAAGGCTTGGAAGATTTTCCTTTCTTTTCTG ATGTTGTTTCTCTTGACACGACATATTTTACAAGCAAGTATAAAATACCGGTGGTACTTTTCATTGGAGTAAACCATCATATTCAACCAAAATTGCTTGG TTGTGCATTGATTGCTGATGAGACCATATACACTTTTGCCTGGCTACTGCAAACATGGTTCATAGCAATGGGGGAACGGGCCCCACAAGTGATTCTCACT GACCAAAACGAGGCTATTAAAGCAGCCGTTGCTGCTGTTCTTCCAGAAACGCGTCATTGTTTTTGTTTGTGGCATGTTTTGGAAAAGATACCAAAACATC TTCAATTTTTATGCTCGTGGCATGATAGCTTTATGGAAAAGTTCAACAAATGTATATATAAATCATGGACAGAGGAGGAATTTGAAAAGAGATGGTGGAA GTTGGTTGACAGGTTTAACATTAGAGATGATGAATGGGTCCAGTCCTTATATGATGATCGTATGTGTTGGGTACCCACTTTTCAGAGAGATATTTCTTTT GCTGGCTTGTCCACTAGTTCACGTTCAGATAGTTTAAATTCTTTGTTTGACAACTATGTCCGCAGTGACACTTCATTAAAAGAATTTATAGAACAGTACA GAGTGATTCTGGAAGATAGGCATGAAGAAGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTGAAGTCTCCTTCCCCTTTTGAAAAACA AATGTTATTGGTTTACACACATGAAATTTATAGAAAGTTCCAGGTTGAGGTTTTGGGTGCAGCGGCTTGCCATCTCAAGAAAGAAAATGATGGCCTGACT GCAGCTTATACTGTCAAAGACTTTGAAAATAATCAAAGCTATATGGTGGAATGGAACACATCAAACTCAGACATAAGTTGTTCATGTCGCTCGTTTGAAT ATAAAGGTTATCTCTGTAGACATGCTATCGTAGTTCTACAAATGTCTGGTGTTTTCAGCATCCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGC ACTGAGCAGGCATCCTATTGGTGAAAAATTGGAAGAGGTTCAATCCAAGGTCCGGCGTTTCAATGATTTATGTAGACGGGCCATAATATTGGGTGAAGAA GGTTCTTTGTCACAAGAAAGTTACTTTATTGCTTTAGGTGCCATAAGTGATGCTTTCAAGCTATGCACAAATTTGAACTCTGCTGAGAACGACTTGAGAC CTGATGCCTCTGCTATCAATGTTGTTTCCAATGTTGAAGAAGAGTATCAATCTATTATTGCATCTAACAATAAGGCCCCTGATCCAAAATTGAACACCGG TAATAAGGCTGTAAGGACCGGCAGGGATATTGTGAACACAGAAAATGTTGAAGGAAATCAAGGAAAGGTACTTCAGCTTGAATTAGCGAATGGCAAAGAT GATTTTCAGCAAATGGACCTGACTGATCCGAGGTCACATAACGTCATTCCTATGCAGTTTCACAGTATGGTGCCAACTCTGTTCCACAATGTTTCGTCAA CACCATTTCATCATACCACAGCTTCAACTCATTTGCACGATAATCGTCTTCCTCGTTAGCTGAATGAACGCCTGAATAAAAACTTGCCTTTTAAATTACC TGAAAGACCATGTACAAAATTGTAGATAGGAAATGCTACTTGTGGAAGACACTACAGCTTTCAGTTAATGGCATCTGTCCTGTAGGGTGGCTAGGCGGTA TCAAAGTTGATAGTTGCGCTAACTACTAACTTGAGTACCATTATTCTCAAAATGTAATCTCGCCATCGATATCGGCATCTTCTGCAGTTTTTTCTCGCTA AATGTTCTGTTAGGTTTGTGCAAGAAAAATGAAAATGATTTCTGAACATCTGGTATAACATTCCATGTAGGCACTGCGTCAATGTGAATGTTAATGATTG CCAAGTGATACCATATCTTAAGGTGTATAGAAGTACAAAGTTTTTGTATTCTGAATGTTTAAATGATGCAATTGTTTGGGTAATATGATGGTAGCTGCAA TTATTGTGGCACACTTGTTTTTAGCGTGGATTAAAACATAGGGAAACATGGATAGGACACGAGAAATGACCTTTTTTTTGTTTCCCACGAGTATCCTCGC ACTAGAGGCAATCTTGTCTGAGCCGGGAACATCCACAGGTATGTGTGGCTAACTCTCCCGGCGGACATTTTTTCATCCACAAGGATCAAACCCAAGACTT TGCTTAAAGGGAATCAAACATGTATCACTTGAACTAACGTCCATTGGTATATATTAGGGGTGGTTTGTATAAGTTTGAAATTGGGAGGAATATTTTGTAT AATTTTACTTAAACTCGGAGATGTCAGTGTAACTTACTCAATTATTTTATACATTTTTTACAATTAATTTATCATCATAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_150140; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_309838
| Blastp | Protein FAR1-RELATED SEQUENCE 4 from Arabidopsis with 62.18% of identity |
|---|---|
| Blastx | Protein FAR1-RELATED SEQUENCE 4 from Arabidopsis with 62.33% of identity |
| Eggnog | protein FAR1-RELATED SEQUENCE(ENOG4111EGR) |
| Kegg | Link to kegg annotations (AT1G76320) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448299.1) |
| Pfam | FAR1 DNA-binding domain (PF03101.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |