| Id Trinity | TRINITY_DN47142_c2_g3_i19 |
|---|---|
| Name Transcript | Ll_transcript_309761 |
| Sequence | ATTATGGTGATTATTTGATTTGTGCTAGGTTTTATTTCTATGGTAATTTATATTAGAAATTGTATATTAGGAAATTATTGTTTGATTAGTGCAGGGTTGT AGTAATACTGTTACTGTGTGTTAGTGTCCTATTGGACTTATTATTTCTAAATATTTCTGTTAGGGTCGGTTTGCGAGTTGGGTTTTGGAGGGGAAGGAAC GAAAATGAAAGGTTTCGGAGCCATAAATACATTTGTGAGGTGGCTTTCAAGCCTTTCGTTTAACCTGCAGACAGACCCTTAGGTGGGATATTTTTTAGCG TTTGATAGACATTTCAAAATATATTTATTTGCGAGTTGGGTGTTGGAGGGAAAAGTAACGAAAAAAAAAAGATTTCAGAGTCATGAAATACATATGTGAG TTGGCTTTGAAGCCTTCAATTTTATTTTCTTCCTCTTCAAAAACTGACTCGCAAACAGACCCTTACTTAGGTGGGATATTTTTAAGCGTTTGATAGACGT GTCAGAATAAACTTCCGGTGTTAAATTTTGCGAGGATGTATCAGTGTCTTACTTTTACGTGTTCTATTATATGTTTGGTATGTGGAATAGACTCTCAATT CAGTTATAGAAAGATTATGGTGTTGTTAAATAGGTCTTTGAAAGTTTTTGTCGTCAGTTATGTCCTTCGGAGTGTATCAGTCTTTAATTGGTGATGAAAA ATCAATTGAAAGGTGTTTTAAATCTTTGAAGAACCATAACTAGTGACGAAATATGTTTATTGTCTGGTTGACTATACTATAATCTTTTGAAGGACTTGAG TTTGTTTATAAGTAGAGCATAACAAGACACATTTTGGTTCCACTAAAATGGGTTGAACCAAAGAGAACATGACAGAATATCTTATCTCGTTCTGTTTCGT CTGCGCACCATATGGTACCTTAATCTGAAAGGGATTGGAAGATTTTGTTAATTGGTGTTTAATTTTATTTTGGTTAGATGCTTTTCTTGTTTGCTTTGCT ATTAGTCGTGCTTAACTGTTTCGGTAACAAAAATTATGCTTCAATTAGGTGGAAAGGTCTGTTTCATACAATGAACATCGTCCCAGAAGACCACCACCTG ACCTTCCTTCACTGCTACTCCATGGTAGAATCATTTACATTGGCATGCCTTTGGTGCCAGCTGTTACAGAGCTTGTTGTTGCAGAGTTGATGTACCTGCA ATGGATGGATCCTAAAGAACCAATATATATTTACATAAATTCCACTGGGACTACTCGAGATGATGGTGAAACGGTAGGGATGGAGACAGAAGGTTTTGCC ATTTATGATGCAATGATGCAGTTAAAAAATGAGATACACACAGTGGCTGTGGGCGCTGCTATAGGTCAAGCCTGTCTACTACTTTCTGCAGGGACTCCGG GTAAACGCTTTATGATGCCACATGCCAAAGCCATGATTCAGCAGCCCCGTGTTCCATCATCTGGGTTGATGCCTGCAAGTGATGTTCTTATTCGTGCAAA GGAGGTGATAATAAACAGGGATACACTTATAAAATTATTGGCCAAACACACAGGAAATTCCGAGGAAACTGTCACTAATGTAATGAAGAGACCATTTTAT ATGGATTCAACAACGGCCAAGGAATTTGGTGTCATCGACAAAATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCTGATGTTGCCCCTCCAGAGGTGTGGG ACAAGGGTGCTGGTATTAAAGTTGTAGATGGATTTTAGTTCCTCTTTGTGGATACTTATATTGTCACTGTCACAACACATGTTCTGGACCCTATTACTAT GAGAAGGGTTTTTCTTCATATTTTGTTAGACATATTCATAGAAAACTGAAGTGCTAGTTACTAGAATAACCCTTCTACCCCACAAAAAATGAAAAAGAAG CAGAGTAATTGATCATTATGTGGACATAGTCACTGATTAATAACCTGCACTTTACACAGGGGTTGGTCTTTTCTAGTACACAATCTAATTAATACATGCA ATTTTTTGCAATCTCTGTCTTATGAACTAAAAGTTTATCTCTGCAAATTATGTGCTGCTATGCTGTCACTTTAGTTAATTTGTGTTTTAAATCATTAAAA TGAAAGAACTGATTATAAAAAAGAGAATAATGTATCTCCTTGTACCAAGAGATAATTTATTTCCTTCGACCAGTGAAAATATGACACA BLAST |
| Tissue | pods |
| Gene name | LI_gene_150152; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_309761
| Blastp | ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic from Arabidopsis with 85.57% of identity |
|---|---|
| Blastx | ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic from Arabidopsis with 85.4% of identity |
| Eggnog | Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity)(COG0740) |
| Kegg | Link to kegg annotations (AT1G09130) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419900.1) |
| Pfam | Clp protease (PF00574.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |