Id Trinity | TRINITY_DN47159_c0_g6_i1 |
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Name Transcript | Ll_transcript_309044 |
Sequence | AATAAATCAAAAAAAGGACACTTTATTCTTTTCTTCTTCCAATCCAAGTATCCAACTCAAAATGCAGCTCTCTCACTCTCACTCTCACTCTCACTCTCTT CTCTCACCACCTTAATGGCTTAATCACAATGTCTTATATTTCTAGGGTTTCCATTTTCTCACTCACTCTAACATTACAAATTTCCCAATTATTCTCACAG TCTTGATACCAACATTCTCCTTCACTTCCCATCTACACCTAAACACAAAAAAGCATGGTTCTTTGTTTCCACCACCACAAACCCACTTCAATTTCACATT CCTTTTCTCTGATCCATTCTTGAAATTTGAGGGTTACATTTGTAAAAATTGAATTTTTTTGGAAATTGGTTTTGGACAATGATTTCTTCTGGGGTTAACT TGGTGATGACTGTTATTGGGTTTGTTGTGAGCACCATGTTCATTGTTTTTGTATGCACAAGGCTTATATGTGCTCGAGTTCGCTTGAATGCTTCTAGGAG ATCCTTTCCTGTAGCTGCCAGATCCAATCTCAGCATGATGGAACGGGGTTACCATGGTCTTGAATGTGCAGCTGTAGCCAAATTTCCAAAAAAGAAGTAC AGCGATAAGTTTTTTTCTGACGCGGAAAATACCCAGTAAGCTGATTTCTGTGCTTCTGAATTTTGTTTCCCCAACCACTCTTTTTTATGTTAATGAAATT AAAAAAATATCATTTTGGTATGGTCAATGGAAATAGTGAAGTAGAAGTCGTACAAAATTATTGTAAAATACGGTTGAAGTAGTATAATTTTCTTTGTTAA GGAGTGTAATTAGTTTCTACCTAATTCAGTAGTGAAGTTAAAAAAATTGTGGGGACTTGTCATGAAGATTTCTACCCCAAATATTACAGGAAAACATGGA TATTGAAATACATTAAGTTAATGATAAACCACTCACCTTGTAGGTCTTGTGGTCATTTGTTTTTGCGACTCTGATGGTATATATTCTCTCATCTATGTTG CATGAGTACTTCAAAGAAGGTGACAAGTAGATACTCGGTACCGGTGCTCTTGGGTACTCCTTTGGTGAGAGTTGTTTATTTTAGGCTGGAAACTTAAAGA TTTTTCCCTTTTTTCTTCTTAGCCACATCAGAATACTGAATCCGAGTCACATAATTAGTCTCCCATCTTTACATCTAAGCTGTATTTGGGTCTCAACTCT CATCCTAAGACCCTCACATCCTCTGCTAGTTCAAATTTTAATCATTTATACATAATCATATTGTGCACCCGTACCTTAGATTTTCAAAAAATGTCATATC TCATACTCGTATTTGTACCAGGTACTGGTACCGTCCCTTATTCGTGCAACATAGGCTCTCATGTTCTGGAAAATATGTATCTCATCTTGCTTTAGTATAC TAAAAAATTGAAATTATCGGAAGAAGTCAATTAAGCATGTGGATACTACATAATATTCTTTTGTATGTAAAGAGATCGCTTTGTAGCCATAAAATTCAAG GCATTAGTATTTGCTATTGGTAAAACATTTCTTTCGAAGTTGTGAAGATTTGGATAGTACCGTTCTTTACAGAACAATAAGTGTAAAAGAAACATTTGTT GTGGGCATGTACACTAACATCTGGTGAATATTCTTGCACACCATACCTTTTCTTCTAATACACTGCTTTCTGATGACCTACAATCCCACATCCACCATTC TCATTGACATGAGTCAAACATATATACTTAAAACAAACTCCGATTTTCTATTGATAGACGTGTATATTCATTGCAGAAAATTGGGAATATTCTTACCCTT CTCTTGAAAGTTACACATTTGTTCAGTTGTTGACTATCCTATGTGAAGTGTTTTTCCAGTTGCATGGCATTCTAAAAGGCTTCAGAACTTCAACCTTTAA CTTCTTTATTTTTGTAATTGTGATTAACTGATCTAAGTTATCATGAATATTAACTTATGGACATCTTGTGGTATTTTTAATCCAAACACAAAATTTCCAC CATCCTTGATCTTTTCAATTTTGTACTCTCATTGCTAATGATTTCTATACTTCAAATCTCTATTTGCCATTTGGCGGTTTTAATAAATATTCAGTTTTTA TTTATTTAAACATGGGCCAATTTGGTCCATTTCTAAACCACTTTACTTTTATTTGGATGATTATCCCTGTTTGACTTGCAATCAAACATGCTGAAAATGA TCTGTTTTACTTTCCAACTTGTGACAAACTTGTTCTGTTTCTTGCTAAAGGCAAACAGAATGACATTGAAATTTAGAAATTTTAGTGCATGAATAAAAGC TGTCATATTTGATGAGTTCAGAATGCTTCTAGAGAAATAAATTGTCTCTCCGGCACTCGGCTATTAAAAAAATTAGTATAACTGAGTGTCTCAATGATGA GCAGTTTCCCTATTCCAGGTGTATTATCACTATCATTTTCCTGGATGCTTATCAGCACAGTCTTTTGAGCTTCTGCTTTTTTTAATGGGAGCAGTTCTTT AGCCATGTTTCCTTTTGCTGAATTGATAGTGTGGTACTGTTAACTGTCTTAGGAGTTAGGACTAATTCATGTCGGTGTCTTGAACAGGTTTTGCCGTCAT AATAAGTTTTGTTCACTTGTTGCAGTGGAACTTTTATTAGAAGGTATTTTCTTTGTTTTCTTTGCGTGTGAGAGATAGTGTGAGAGCGAGAGTGAGGGGG TTATTTTGTCTTTTCTTTTTAGAGGAAAATATACTTGCATCTGCTGTAATGGCTTTTCTTTGAACAAAATCTTTGAACTCTTTTCAACACACATACCTTC TTTGCACAATATTCCATACCAATGAAAATTATAAGATTAGAGAGGTTACTTTAACTTCAATGACTGAATGGATGTAAGTATATGTATAACTAAATCAAAC ATCATGAACGATCAGTGCAATTTATTCTTGTTATTATGTACTTTTATCGGTCTCACTTCTAAATGATCATCAATGGACACTTCTCATTCAGATAATTATT TCCTGGTTACGATTATTCAATTTTGTCGTATGTGCAGATGCTCAATCTGCCTATCAGAGTACCAAGGTGACGATGTACTGCGTATCCTCCCCTATTGTGG ACACTCATTCCATGTGTCTTGCATAGACATATGGCTGCAGCAGAATTCAACTTGTCCCGTTTGTCGAATATCGTTGCGCGGATTTCCTGAGAGAAAGCAA CTTATGCAACCCTTATCCAGCTCCGCTTTGCGACTTCATTATAGCATGGAATCGTTTGACAGTGATCATTATTACTGTATGATGACTAATAATGGATTAT CATCACCAATCCCTGAGAACAATGCGGCAAACACTACACCGGAGGGTCATTTCCCACCCGAGGGTGGTCTGGAACCTGCTAGGGACACTATCACCTGTTT AAGTCCGGGTGATATCATTAAAGACGAGAGGAAGAAACATGTTGAGAGCCCATCAAATTTCTAGATTCGATTCTTCATTGTGGTCCTTCGAAATCACCAA TCGAGTAAAGGTCATGTTTCTAAATTGAACTAAAATGCTTTTTGGCATGCTGAAAGTTGGTTTTATTGCTTTTCTTTCATTTTGCTGTATATATAGCAGA GAATATTTTTTTCTCCCCTCATTGGGATACCCTTGACTGTATTTGAGATTTATTTTCATTCTCTCTATCCCTCTTCCTTTTACAGTTGTAATTAGTCCTA AGACTAGAATTAGTTAAATATAAGATGGTGTTTTTCCTGTGTTTCTTTTAACATGATGGCCATTGCATTAACACAGTTCATGAACTGCCATTAATGTATC TTGGTTTTGGCCAACAAGTATATGATCTCTTTGTAACACACTAACACATGGGTAATTATTTTGAATATGCAATAATTATGGTCCTTAGTAA BLAST |
Tissue | pods |
Gene name | LI_gene_150308; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_309044
Blastp | E3 ubiquitin-protein ligase ATL59 from Arabidopsis with 36.73% of identity |
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Blastx | RING-H2 finger protein ATL34 from Arabidopsis with 39.13% of identity |
Eggnog | zinc ion binding(ENOG41121N2) |
Kegg | Link to kegg annotations (AT4G10160) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019433202.1) |
Pfam | Anaphase-promoting complex subunit 11 RING-H2 finger (PF12861.6) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |