Ll_transcript_309630

• Id Trinity: TRINITY_DN47177_c4_g1_i3
• Name Transcript: Ll_transcript_309630
• Sequence: CTACTCTTTCTCACCACTTTCACCATTCTTACTTACTTTCTTTATTCCATATTTTTCTCTCTAACCCAAACCCAAAATCTTTCCTTTTTTTTTCTGGGTA TATCTCTTTTCCTTCTTCTTATCAACAACTCTTTCGAATCTTTCATTCAATTTCATCAAGTTTTTGTTTGTTGTTGTTTTCTAAGTTCTTATTAATTAAT TAATTAATGGGGTTGTGGAGATGGTCTCAATTCATTTAACTTCTGCTTTATAGATCCTGTATTTTTTTATTGCTGCTAAAAGTTTAAGCTTTTAATCCTT ATTCTTTACTTCTATGTTTAATGAGCAAAAATGAATTGCTAGGAATGCCATTCCATTTTTGTACACGCTTATTCCATAAGCTGAAAAGAGCTTATATGAG TATAATAAGTTATTTTCATAGCTTGTTCTATAAGCTCTTCTAAATAAAGATCTATAACCTTATGTCAATTCTAGAGATATCTTTCCAATGCACGCTTTTT GTGAACAAAGTTGTAGAAAAGTGTGGATGGGGTTATAAAGGTTGATCTATTTCTGGGTTGTAGACTTCAAGCAAATAATTATGCAGTTTTGCTTTATAGA TTTTGAACTAGTGTGTGCACTTCTATGTTATTTGATTTTTTCACAGCTCTTGAAAGAGATATGTGATGAACCATAAGAACCATATATTTATTTCAAATTG GAATGACATGATGCATTTGAGTTAGTTGACTTGTTGCTTTTTACAGTTTCTATATTTTAGTTGGGAAAGAAATAGAAGTTGGAATCATAAGCTTGTTTGC ATACATGATTGGTGTTGTTTAAGGTAGTAGTTTATAGATACTTGAAGATTATCAATGAAATGTTTTGCTTATGAACATGACTTTGCTAGTATGTGTGGAT CAGCAACTTATGAATGCAATTTCTTCATTTTCTATTTTGATTGTTCTATTTCTTCTATATTGGCATTATCTTTCTCTTGCTGGACATCAACTTGGTGAAA TATTCAAATGATTTATACTTTCTGCTTGACTGCATATAGAACTCAATTCCCCCAGCTTTTTTAAAAGCTGGTTTCATCACTTGCATATGCAGGCTAAAGA GGTGATAGTGAACAAAGTTGTGACTTGTGAGAAGGGTTCCTTGATTAATGGCATTTGAGCACTACTTTTCCGATGAACGTAAAAGCGAAAGCATTCCCAA TGCTGTGACAGAAACAGAAAATTACAATGGTTGTTTTGATTGCAACATCTGCTTGGACTTTGCATATGAACCGGTAGTCACTCTTTGTGGCCACCTTTAC TGCTGGCCTTGCATCTACAAGTGGCTTCATGTCCAAAGTGATTCTCTTGCAGCCGATGAACACCCGCAGTGCCCTGTTTGCAAGGCCGATATATCCCATA CTACAATGGTTCCACTCTACGGCCGAGGCCAGGCCTCAAGTCAAAGTCACCATGTTGGAAAATCATCCACTTGTTGCGATATTTTCATACCACCTAGACC CTCTGCTTCCAGTGCTGAAGCTCTTTTGGGAACGTCGTCTCAAACTGGTCAACAACTTCCATACCGAAATCCTTATCAGGGTCACGGCGAAGAGGATTCC TCCCCTCAATTGCTTAATCCTGGATATCAAAACCCTATGGTTGGAATGCTTGGAGAGATGGTTTATGCTCGAGTTTTTGGCAATTCAGAAAATTTGTATG CCTACCCGAATTCTTATCAGCTGATGGGAAGTAATAGCCCAAGTTTGAGACAGCAAGAGATGCTGATAGACAAATCACTCAACAGAATTCTGATTTTTCT TTTTTGCTGCTTTGTTCTGTGTCTTATTGTCTTCTAAGTAAGTAGTTGAGATTTTTAATATTCTCCCATTCCTTGTTGTATACTTTGTAAAGTAGCATGA ATGCAATTTATATTCTTCTGCATTTTGCAGAAAGACAGAGTTATTATAGCCTTATTTTATGGTATGCAGAGGTTTTCTAGTTTGAAAATGTAATATCTAA TGTTGTTTTGGGACTAAAGGAATTTAGTTAAAGATGCAC
• Tissue: pods
• Gene name: LI_gene_150471;
• Additional information: details;

Expression of Ll_transcript_309630

FPKM

• PAB: 2.3
• PNAB: 4.1
• PS1: 2.6
• PS2: 1.5
• PS3: 2.3
• PW1: 3.5
• PW2: 3.4
• PW3: 2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_309630

• Blastp: E3 ubiquitin-protein ligase RMA1H1 from Capsicum with 49.1% of identity
• Blastx: E3 ubiquitin-protein ligase RMA1H1 from Capsicum with 47.09% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (107855034)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019435392.1)
• Pfam: Ring finger domain (PF13639.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;