Ll_transcript_310498

• Id Trinity: TRINITY_DN47190_c0_g1_i16
• Name Transcript: Ll_transcript_310498
• Sequence: ATATTGTGGCTGAGAATCCAGACAAATTTAGAGTTGTAGCACTTGCAGCTGGTTCAAATGTTACTCTTCTTGCAGATCAGATAAAGAGATTTAAGCCTCA ACTTGTTTCAGTTAGAAATGAGTCTTTAGCTGCGGAACTTGAAGAGGCTTTAAATGGTATTGAACATAAACCTGAGATCATCCCTGGAGAGCAGGGAATC ATTGAGGTTGCTCGCCACCCAGATGCTGTCACCGTAGTCACAGGAATAGTGGGCTGTGCAGGACTCAAGCCTACAGTTGCAGCGATAGAAGCAGGGAAAG ACATAGCTTTGGCTAACAAAGAGACGCTAATTGCTGGAGGTCCTTTTGTTCTTCCGCTTGCTAAGAAGCATAACATAAAAATACTTCCTGCTGATTCAGA GCATTCTGCCATTTTTCAGTGTATCCAGGGGTTGCCGGAAGGTGCACTTAGGAAAATTATTTTAACTGCGTCCGGAGGTTCTTTCAGGGATTGGCCTGTA GAAAAACTAAAAGATGTTAAAGTTGCTGATGCATTAAAGCATCCCAACTGGAGTATGGGAAAAAAGATAACTGTGGACTCTGCTACCCTTTTCAATAAGG GTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTATGATGA
• Tissue: pods
• Gene name: LI_gene_150594;
• Additional information: details;

Expression of Ll_transcript_310498

FPKM

• PAB: 10.5
• PNAB: 30.6
• PS1: 27.9
• PS2: 12.1
• PS3: 29.4
• PW1: 18.8
• PW2: 11.6
• PW3: 12.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_310498

• Blastp: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic from Arabidopsis with 90.23% of identity
• Blastx: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic from Arabidopsis with 90.23% of identity
• Eggnog: Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) (By similarity)(COG0743)
• Kegg: Link to kegg annotations (AT5G62790)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456932.1)
• Pfam: 1-deoxy-D-xylulose 5-phosphate reductoisomerase (PF02670.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;