Ll_transcript_384519

• Id Trinity: TRINITY_DN47200_c3_g5_i1
• Name Transcript: Ll_transcript_384519
• Sequence: ATTGATCTTCTCAAGATTTACCTGGCCAGATACAGAGAGATTGAGGGTGATACCAAGGGTTCGACCAAGGGAGGAGATGTATCTTCCAGGAAAGATGTTC ACCCAAGCCCTAATGCTCAGTTTGCTCATCAAGGTTCTTTCTCACAAGGTCATGGTGTTGATTACACAAATTCTCAGGCTCAACATATGATGCTTCCTTA TCAAGACCAGGAATAGATATTAATCTTGCTTCAGTGTTTTCATGCATCATTTCAATGCCTTGGAGCTATAGTATGTGCCCTTGGCATATTTAAAGCATTT TATGTCATGTGAATATGGACTTAAGAGATGTTGGTTCTTGTAACGGGATATTATTTGTTAATCATTAAGACCTGCATATTATCTTCACGTGTCTTTGCAG AATGAACATTTTATGTTATTGGTTCCAAACATAAACTGGCATGTTCTTTTCCTTATTCCTACTGATGGCATCACGCTTTTTTGTTTAGCAGTAATCTCTT CATTTTGTTTGCAAGATACAGTATTTATTCTTACGTATGCCACAGAAAATTC
• Tissue: pods
• Gene name: LI_gene_150686;
• Additional information: -

Expression of Ll_transcript_384519

FPKM

• PAB: 1.8
• PNAB: 7.1
• PS1: 7.7
• PS2: 6.3
• PS3: 13.9
• PW1: 8.1
• PW2: 5.8
• PW3: 4.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_384519

• Blastp: -
• Blastx: Nuclear transcription factor Y subunit B-10 from Arabidopsis with 57.35% of identity
• Eggnog: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling(COG2036)
• Kegg: Link to kegg annotations (AT3G53340)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019443047.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;