| Id Trinity | TRINITY_DN47222_c2_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_384177 |
| Sequence | CTTTGTGAAAACCCTAACGGGTAAACCAATAACCCTCGAGGTTGAGTCCTCTGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATC CCACCGGACCAGCAGCGACTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTCGCCGATTACAATATCCAGAAGGAATCGACCCTCCACCTCG TCCTCCGCCTCCGCGGTGGCGCTAAGAAGCGTAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCATAAGAAGGTGAAGCTTGCGTTGCT TCAGTTCTATAAGGTCGATGATTCTGGTAAGGTTCAGAGGCTTAGGAAGGAGTGTCCTAATGCTGATTGTGGTGCTGGAACCTTCATGGCTAGCCATTTT GATAGGCACTATTGTGGAAAGTGTGGGTTGACTTATGTTTACCAGAAAGCTGGGGATGAATGATTTTATCAATGGTTATGGTTTTGATTTTGATTCTGGA TTTTGTGTTATGATGAATGTTTTGTTATTTATATGTTGGTAATTTGATGTTATGCGAATTTTGGATTTTAGATATTTAACTTAATGGTTCATTGAATTTC TAGTTTTTTGTTAAGGTATTTCTGTGGTTGTTAAATTAAAGTGTTTAGTTTGTCCAATTTGATTGCATGGTGAGTTATGAGTGATTACAAAATGGGTAAG CTACATAGGTGTTTATAACCTAGTGGAATATTTTGGAACTGCAATTTTATTATTTGTAAGTTTTGAACACCTAGATTTGACGTCTATGTTGATGTCTCTC ACGATTGCACAGTGTATTTACAACTTTGATCAAGTATGGTGTACCTCAATGATCGTTAACATCAATATTAAATGTGGATATTGAGTGTCAAAAATGGGTG TTTGAAAAGCATTTTCCTTTATATCATTAGAGGTTATCTACTTAATTGGATTCTGGATTGCAATTACTTGGTGGATGTGTCCAAAGTATCATGTGTCTAT GTACTATTGTTGCTTCCTGATTTTCGGCTTAGATGATATTTTTGACTTGAAGAATTCATTGCGCAAATTCCTACTTGCTGCAATGCTACTTGATGATAGA GATGCCATAGTTTTCATTCAATGAAAACATTGATGAGAAGAAAAAGTATTAAAATAAAATAGCCTCTTGTTTTCATTGTCTATTTAAATGTTCTGCTTTG AAATTTCCCAATAGTATACAATTCATACCTTGGTCCTATTTCAAGCACGTTAAACAACTCCCTTTTAGGGCAAAAAAAAACGTGTCAATTCTTTTTTGTT TTTCCAAAGTATGTGAACAAGCCACATCATAATATGTTTTTTCCAATGACAAGCAAACTAGGATGATCTCAAGAATGCATGAGGGAAGTGTCTGCTGAAA AATGAATTTTTTGCTTTCACTGTTAATGAATACATGCCGTAGCAGGGGATGTGAATTAGCGCCAAGCTGATATACCTATAGAAAAGATGAATGTAAGTAT ACTTTGTTCATAATGATATGTAAAGAAAATATGAGACATGACATTTTAGTGTTGTAGACTTGTAGTATTTTACCAGATAGGAGCCATTGGTGTATTGAGC TCGAGAAATGGGTATGGCCACCTAAAGGAATGAGAGATCCTTAGAAGTTGAAGAAAGGTTTTAGCTGATAATGCAAAGAAAAAGAAAATATTGTTATGTT ACCATTTAATGCCACAGGCATGGATGACCCATTGGAAAATGATGTAGCCACAGCTCCAGAGCACAAAATATGCAAGTCTAAACCAAGGAAATGGCTGAAA AAGAATAGGACAATATTGAAATCATGAGATGGTTGGGTAAGTTTAGCTGCAAGTAACTGTTCTTATGATAGTACATATATAGTTGTATTTCACTGTGTGA TACTTACAAGATTATTCAAAGTTGTATCCAAAAGGAGGAAAACTGCATTCAAGGTATGCATGCTAGTTATCAACTGCAAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_150827; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_384177
| Blastp | Ubiquitin-40S ribosomal protein S27a-1 from Arabidopsis with 90.85% of identity |
|---|---|
| Blastx | Ubiquitin-40S ribosomal protein S27a from Solanum with 95.36% of identity |
| Eggnog | 30S ribosomal protein S27Ae(COG1998) |
| Kegg | Link to kegg annotations (AT1G23410) |
| CantataDB | Link to cantataDB annotations (CNT0000474) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428995.1) |
| Pfam | Ubiquitin family (PF00240.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |