Ll_transcript_384675

• Id Trinity: TRINITY_DN47240_c1_g1_i11
• Name Transcript: Ll_transcript_384675
• Sequence: CAACCTCACAACACAACCTGTCTCCATGTACCACCTCTTTCTACACATTACTATATTCTTTCACAGCTTCTTTCCTTCCCCATTGATCAAGGGACGGTTT CATATACCCTTTTGCAAAATAAAAACAGTTACCTGAATTTCCATTCTTTAGATTAAGGTTGTGCTGTTTTTCTCTGTGGTCCATTTCTCCACTTGCAATG TCAAATGATAATAACCAAGGTCCTGGGACCTGTGAAAATAGAGAAGATATCTCAATTCAAAAGGACCAAATATCATCTGAAATAACTGAGGAATTGCCAA GTGAACAGCATGGAACAAGGCAAAACCTTAACTTGGACATATCCACAAGAAAGCTCGAGGAAGCTGAAGAACACCTTTTCAGAATAAACATACCTCCAAC TCCACCACCTCCCGGAACAGTATACTATTCCCCTTATCCAAGCTCTGGTTTCTCTCGAAGCCACGAAACCCCGGGTCCTTCCTCGTCAAAAAGTAGATCA ACTATTAAGAACTTTCTCACGAGACTAAGTTTTAAAATTCACAACAGCAATTCAGAGATTGAAAAGGCTTCCTTCCTAGCACTTCAAGGTTCATCCAAAG TGGCACCTAAAAAGCTTTTTATTTCAAGGACATTATCTCCTTCAAAGCTTGCCGCAGGTACAGCGAACACAGCATTATCCTTACCTGTAACCCCAATTGC TCATTCAAATCAAGACTCTACACATGGAGGGAACATAGCTTCTATAGCAATATCTGTTGAAAAGGGAATGAATTTACCAATTCATCGTTCCCATTCAGTT CCTGATTTTACCAGAGACGATAATGTCGGTTGCATGTTTGGTATGGTTTCAACCACACCAAGATTGGCTGAGAAAACTGTCACAAGGACGACTCCAACAT CTATACCTGATGATACTGTTGAAAATGAGGACGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGATTGAATTGGGAGAAGGTAC TAATACTCTTAAATTGGAGTGCAGCTGCAAAGGTGAACTATCATTTGCGCACCGAGAATGCGCAGTTAAATGGTTTAGCATTAAAGGTAATAGAATTTGT GATGTGTGCAAGCAAGAAGTTCAGAATCTACCGGTCACTCTTTTACGAATTCAAACTGTTCGGGGGCACAGAGACCAGGAAGATGAGATTTCTCAACACA GATTTTGGCAGGATGGTTCCATTCTTATCATTGTCAACACACTGGCCTACTTTTGCTTTCTTGAGCAGCTTCTGGTTTCAAAAATGGGATCTAGTGTAGT TGTAATGCCACTCCCTTTTTCTTGTATACTAGGTCTTCTTGCAAGCGTGGCAGCTAGAACAATGGTGAGGAGAAAAGATGTTTGCGTTTATGCAACTGTT CAGTTTGCTCTGGTGGTTCTGGCTGGACAGATTTTCTATTCATTGATTCATATGCCAGCTGTTCTAGCTATCCTACTTGGTACAGTCACTGGCTTTGCAA TTGTAATGTGTGGAGCTTCTATACTTGCTGTGATTTTGAAGTGGAATCAACAGCATGATTCCCAGCAGGCGGTACTTCCCGATCAATCATCATCGGCAGC AGTTCATCAACCCCATATTGATTCTGATCACCCTGAGTAATTTAGGAGACTCTCCTGCAATTGTGAGCTGAAAGAATATTGTCCATCGTATTTACTTTAA GGATGGCATCATTAGGTGTTTGGTTGTACATAATGTATAGACAAGTTTGAGCACATTACATTATACCTCTCCTTTTTCAAGCAATGATACAGAGGTTGAG AAAATGAGGATCACATCTTTTGTCCAAATATGTGTACCACTCCATGTACCCTTTTATTCTTATGGGTCGAAAATGTAAATTTATATATTTAATTCATATC CCAAAAACAAAAGGTTGATTATTCTTTTTATTTTGATATGTATACATATATATTTAGTTGATTGCCCTATGAAAA
• Tissue: pods
• Gene name: LI_gene_151015;
• Additional information: details;

Expression of Ll_transcript_384675

FPKM

• PAB: 0.2
• PNAB: 0.3
• PS1: 0.4
• PS2: 0.2
• PS3: 1
• PW1: 0.6
• PW2: 0.5
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_384675

• Blastp: E3 ubiquitin-protein ligase MARCH7 from Rattus with 29.17% of identity
• Blastx: E3 ubiquitin-protein ligase MARCH7 from Rattus with 29.17% of identity
• Eggnog: (Membrane-Associated Ring finger (C3HC4))(COG5183)
• Kegg: Link to kegg annotations (311059)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019432271.1)
• Pfam: RING-variant domain (PF12906.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;