| Id Trinity | TRINITY_DN47240_c1_g1_i17 |
|---|---|
| Name Transcript | Ll_transcript_384681 |
| Sequence | CAACCTCACAACACAACCTGTCTCCATGTACCACCTCTTTCTACACATTACTATATTCTTTCACAGCTTCTTTCCTTCCCCATTGATCAAGGGACGGTTT CATATACCCTTTTGCAAAATAAAAACAGTTACCTGAATTTCCATTCTTTAGATTAAGGTTGTGCTGTTTTTCTCTGTGGTCCATTTCTCCACTTGCAATG TCAAATGATAATAACCAAGGTCCTGGGACCTGTGAAAATAGAGAAGATATCTCAATTCAAAAGGACCAAATATCATCTGAAATAACTGAGGAATTGCCAA GTGAACAGCATGGAACAAGGCAAAACCTTAACTTGGACATATCCACAAGAAAGCTCGAGGAAGCTGAAGAACACCTTTTCAGAATAAACATACCTCCAAC TCCACCACCTCCCGGAACAGTATACTATTCCCCTTATCCAAGCTCTGGTTTCTCTCGAAGCCACGAAACCCCGGGTCCTTCCTCGTCAAAAAGTAGATCA ACTATTAAGAACTTTCTCACGAGACTAAGTTTTAAAATTCACAACAGCAATTCAGAGATTGAAAAGGCTTCCTTCCTAGCACTTCAAGGTTCATCCAAAG TGGCACCTAAAAAGCTTTTTATTTCAAGGACATTATCTCCTTCAAAGCTTGCCGCAGGTACAGCGAACACAGCATTATCCTTACCTGTAACCCCAATTGC TCATTCAAATCAAGACTCTACACATGGAGGGAACATAGCTTCTATAGCAATATCTGTTGAAAAGGGAATGAATTTACCAATTCATCGTTCCCATTCAGTT CCTGATTTTACCAGAGACGATAATGTCGGTTGCATGTTTGGTATGGTTTCAACCACACCAAGATTGGCTGAGAAAACTGTCACAAGGACGACTCCAACAT CTATACCTGATGATACTGTTGAAAATGAGGACGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGATTGAATTGGGAGAAGGTAC TAATACTCTTAAATTGGAGTGCAGCTGCAAAGGTGAACTATCATTTGCGCACCGAGAATGCGCAGTTAAATGGTTTAGCATTAAAGGTAATAGAATTTGT GATGTGTGCAAGCAAGAAGTTCAGAATCTACCGGTCACTCTTTTACGAATTCAAACTGTTCGGGGGCACAGAGACCAGGAAGATGAGATTTCTCAACACA GATTTTGGCAGGATGGTTCCATTCTTATCATTGTCAACACACTGGCCTACTTTTGCTTTCTTGAGCAGCTTCTGGTCTTCTTGCAAGCGTGGCAGCTAGA ACAATGGTGAGGAGAAAAGATGTTTGCGTTTATGCAACTGTTCAGTTTGCTCTGGTGGTTCTGGCTGGACAGATTTTCTATTCATTGGTAAGTTCTTTTT GTAGCCGTAGTTGCAGTGTGCTTTGTTAATTTTTTTGCGACATAAAAGACTAACCATGCTTGGGCCAGCTAAATAGATGATTTCCCACCGGCTTTCTTCT TCGACTTCCCTGTGCGGCAAGGTTTTACGTTATGGTCTGTAACCTTGCACCTGTAATATTGTAGTTGTGGTAGTCGTTGCAACCACAATTTAAAACCAAG CTATCTGAAATTCTTCAAGCTTGTTGCATTCAAACAAAGCTTCGATTATATTGTAAAGATAAATTATCATTTACAATATTTTGTTCAATCAAATGTAGTT AAAAGTAGAATTGTTGTGGATTTCAATAGTCAGAATTTGCATAATCATAACCTATCTAATAACAAGTATTTTATTGGGCTGGCAGATTCATATGCCAGCT GTTCTAGCTATCCTACTTGGTACAGTCACTGGCTTTGCAATTGTAATGTGTGGAGCTTCTATACTTGCTGTGATTTTGAAGTGGAATCAACAGCATGATT CCCAGCAGGCGGTACTTCCCGATCAATCATCATCGGCAGCAGTTCATCAACCCCATATTGATTCTGATCACCCTGAGTAATTTAGGAGACTCTCCTGCAA TTGTGAGCTGAAAGAATATTGTCCATCGTATTTACTTTAAGGATGGCATCATTAGGTGTTTGGTTGTACATAATGTATAGACAAGTTTGAGCACATTACA TTATACCTCTCCTTTTTCAAGCAATGATACAGAGGTTGAGAAAATGAGGATCACATCTTTTGTCCAAATATGTGTACCACTCCATGTACCCTTTTATTCT TATGGGTCGAAAATGTAAATTTATATATTTAATTCATATCCCAAAAACAAAAGGTTGATTATTCTTTTTATTTTGATATGTATACATATATATTTAGTTG ATTGCCCTATGAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_151015; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_384681
| Blastp | E3 ubiquitin-protein ligase MARCH7 from Rattus with 27.93% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase MARCH7 from Rattus with 27.03% of identity |
| Eggnog | (Membrane-Associated Ring finger (C3HC4))(COG5183) |
| Kegg | Link to kegg annotations (311059) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019432271.1) |
| Pfam | RING-variant domain (PF12906.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |