| Id Trinity | TRINITY_DN47252_c7_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_384089 |
| Sequence | ATTCTCTTCACTATTCTCAATGTCATTTAACGTCCCAATGTTCATCCCGTTACATATTTCCAATTACTCTCTCTCTCTGTGTATAGAAAAGAGAGTGTGA AAGAGTAATCATTAATTAAATAAAAAGAGGAGAATGATTTGGAAGGAAGCGCGTTGAGAAGAGCGCGTGATAATAAATGGAACCTGTCATCGATGAATAG AATATATAATTAGATACACTCTCTCCCTTTTTAGTTTTTACAAAAACTGCTTCCTTATTCCTCTTCCCTATAACTACATATATATTCTATTCATTTTTAA TACCTTACTATAACTTTGCTTTCATCAAAATATCCAATAATTAAATAGTTTTATTAATGAGAATATGTTACCCAAGATGTGAATGATTAGAATAAGTTGA TTGTGGTTGTCTGTGATGTATCACGTGAGGAAGCATGTAGAGAGAGAGGAATGGACACAAAGTTCTAGAAAAAAGAAACAAAATGTTCCCAAAGCCCAAT GCACCTCTTTCTCTGTAATAAGTATCTTGTTCCGTGTGGTAGCATCATAGCCAGCCAAGAAAGAAAGAGAAAAGTGAAAGGTGGGAACATAACACTTACA AAGATACATTACTTTTTTAATTTCCACCTCTCACCTTTCTGCTATATATTTTTGCCCTTTAGCTTTGTTTCTGTTCCTTTGAAGAGATAATAAAAGTTAT ATTAAAAAGTTACAAAGGAAGGAGGGAGAGATAGATAAATATGCAACAACAACAACAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCTTACTAT CCTAACAACGTCACCACTGATCACATTCAACAGGTTCCTTTTCCTTCTTCTTCTTCTATCTTCTTTGCTTAACAAGATTCTTTTTTTGTTTCACTCAATC TCTATTTATTCTCTATATATGTACTCCTTTTTTATCCATTCACTGTCTGTTCAGGAGACCTTTTGTCTCAGCATCTCAGCTTGTGGGTCTTATTTCTGTG CCACTTGTGTTATGGTTTTTATGCTCATATACATATTGTTCTGCTTATTCTCTGTCACTTTCTGCTACAAGTTACGTAATTTTTGGTAGTTTTTAAGTCA GTGGTGTTTTTACAAATGAGTCATAAATAATTTCTGTTCTTATGGGCTTCTCACATCTTCTTTGCTCTGTGTTCAGGTTAGACTGTGTTTAAGCTATACT TATGAGATGATAACCATTATTTTTATCAAATCCAATCCATTACAAAAACTACTTGTTGCTCTTCTGATTTTTTGCGCAATCATTTATCATTTAATAAGCT AGTCTCATTCTAAGATTCTATAACATAACACTTGTTGTCTTGTAGCATCCCACTTTATAAAACATGAAGTTAAGTGTTCCTGTCATAATCTTTTAAGTTT ATTTTCATAGTATTCAAGTAGTAAAAAAAATAAACATTCATAATTTTTTATGTGTTTCCTTCAAACTTGTTGTGTGACATTCTTTGGACAACAGATCCTT GTCTCCAAGTACTTACTTTAGTTAAGGTTACAATTAATTTAAGATAGTTTGAGATTAAATTAACAAGAAAGGAAATCTCATACCAGAAAAGACTAACTAA CTAAATTGATATTTATAATATTGAGTCAACTAAAAAATGAGCATATATATGAAGCCTTTTTTATGGGAAGCTAGTTCAGCAAGTACTATTTCCCCTGCAA TTTATGATATTATTTATCATTGACTTCATTTAACTATTTCTCTCACTTTTTCAAACAGTACCTGGATGAGAACAAGTCATTGATTCTGAAGATTGTTGAA AGTCAGAGTTCTGGCAAGCTGAGTGAATGTGCTGAGTAAGAATTAGTCCAACTTGTAAAATCAATTCAATTTTTCTTTTCTTTTCATAAAACATGTTTGA ATCTTTTATGGGTTTAAACTGAGTGTGCACTCTTCAGTGACTTTCTATTTTTATGCAGGCTTCATTCAAAAATTCGGAGATACCCCATAACATTAAAAGT TTTATATATTGTCCTTTTACCCGAATATTTATGACAGGAAATTGCAAAATATGAGTATTTAATGCAAAAGGTTTTTTTTTTGTAAAAACAGTTCAAATCC CTTGTTTCATTGGATACAGATATGACCCAGTATAGATATGTTCATAGAAAAACTCATAAATAATTGAAGACATATTAACGAAGGGTCCAAACCATAGTTC GCAACTGCATCATTTAAGAGTTTTCCTCTAGAGTTATGCAGTTCAAAGTAACAGGATAATCTCATATCTTAGTTGTATTCATAATTTGTTTTGTCGGGAG CACATCTGTTGTACCATAAAGTGTTGGTACATGGAATGGTACACTTCTGTGGGACAGATGATGTCCCCCCGTTTTTGTCTTAGTTTATCTGGTGTCAGAT TCTCATTACATTTTTGTTCCGGTTCTTCGGGTGCGAAAAGATCATAATCCAGTTTGTCATTGTTTCAGGAACCAATCAAGGCTACAGAGAAATCTCATGT ACCTAGCTGCAATAGCTGATTCTCAACCCCAACCACCTGCCATGCCTGGTCAGTATACTCCTGGTGGGGTTATACAGCAGGGAGCACACTACATGCAAGC TCAACAGGCTCAGCAAATGACACAGCAACAACAACTAATGCTCGCACGCTCTTCTCTTTTGTATTCCCAACAGGGATATTCCGCACTTCAACAGCAGCAA GCCATGCACAGTCATCTTGGCATGAGTTCCGGTGCAAATACTGGGCTTCACATGTTGCAAGGTGAAGCCACTAGTGTGGGAGGCAATGCTGCAACCATAG GTTCTGGAGGGTTTCCTGATTTTTCTGGTAGAGGACTTGGCGGCAAGCAAGATATAGGAAGTTCAGCTGAAGGAAGAGGAGGAAGCTCTGGTGGCCATGT CGGTGAAGGCGGGGAAACTCTCTACTTGAAATCCCCCGATGATAGAAACTAAACCAGTGTCACAGTGGTGAAGTTATGGCCTTTCTAGTTTTAGTGTTTT AGTGATAGGAGAAGCTAGCAGTGAACCTTTTATTAAGTAGGGGAAGGAAACAAGGAAAATTCTGCTGCTTAGTGTCAAGTTTGATTTAATCTAATGCTAA AGGCAAATAATCACGTCATTGCCTTAATGTTTCTAAAGTAGTACTAGTAGTATGATGCATGCTCTATTTCTAGTGTAAAATTTTGGTCATAAAATGAGGT TGTTATTTGTTAAGGTCAAAAGTTCATTCTCATTTCTGTTCTGTGTTCTCACAATTTAGTTCCTCCAATTAATATTTGATCTTGCAACTTCTTGGTTCAT ATTTGGTATTCGTTTTTTCCTTCTAACATTGACATAGTAATACAAGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_151127; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_384089
| Blastp | GRF1-interacting factor 1 from Arabidopsis with 47.59% of identity |
|---|---|
| Blastx | GRF1-interacting factor 1 from Arabidopsis with 57.45% of identity |
| Eggnog | synovial sarcoma translocation gene on chromosome 18-like(ENOG41128HA) |
| Kegg | Link to kegg annotations (AT5G28640) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439929.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |