| Id Trinity | TRINITY_DN47272_c7_g4_i3 |
|---|---|
| Name Transcript | Ll_transcript_383798 |
| Sequence | GACTAAACACAAGGGACAGAGTATCCGTTCAGGGCACTGCATCTTTTTAAAACTAGCATTGTGCCTTATCATCATTCATTCCTACTCAAACAACAACTTC ACTTTCTTTCACTAAACTCAACTTCCTATAAATTCTCCTTCATGTCTTCACTTCTCTCTCTTTACACTCCTCACACTTTCACTTCCGCTCCTTTCTCATT CAAATCTAACCGCTTCTCCTCTCCCCGAACCACCGTCGTCGTTAGCGCCGCCGTTTCTTCTCCAGAGAAGCGAACCAGAAAGAAGAAGCAACTCATTAAG GACGATGACTCTTCATTGGAGAATAACCTTCGCTACACTTTCATGGAGAATCTCATGGACCGTGCTAGGAACCGTGACTCCGCTGCCGTCACCGCTCTTA TCTACGACATGATTGCCGCCGGTCTTAATCCTGGTCCTCGCTCCTTCCATGCTTTGGTTGTGTCTCATGTTCTTAACGGTGATGAACAAGCTGCGATGGA TTCGTTGAGAAGAGAGTTGAGTTCGGGACTTCGACCAGTTCATGAGACATTTGTTGCATTGGCGAGGTTGTTTGGGTCTAAAGGGCGTGCTATCAGAGGT TTAGAGATACTTGGAGCAATGGAAAAGCTTAATTATGATATTCGTCATGCTTGGCTAGTTCTAATTGGGGAACTTATTCGTAACAAGTATTTGGAAGATG CCAACCAAGTGTTCTTGAAGGGTGCCAAGGGTGGCCTCAAAGCTACTGACGAAATTTATGATACTTTAATTGAGGAAAACTGCAAAGTCGGAGATCATTC TAATGCCTTAGATATTTCATATGAGATGGAGGCAGCTGGCCGAATGGCAACCACATTCCACTTCAATTGTCTGCTCAGTTGTCAGGCTACCTGTGGAATA CCTGAAATAGCTTTTACAACTTTTGAGAACATGCTTTATGGAGAAGATTTTATGAAGCCTGATACGGAGACTTACAATTGGGTTATTCAAGCATATACAA GAGCTGATTCTTATGACAGAGTACAAGATGTTGCTGAGTTACTTGGCATGATGATTGAACATCACAAGCGCATACAACCAAATGTGAAGACCCATGCGCT GTTAGTGGAGTGTTTTACCAAGTACTGTGTAGTACGAGAAGCTATAAGGCATTTCCGTGCCCTTAAAAACTTCGAAGGGGGTACAAAAGTTCTACATAAT GAAGGGAACTATGGAGATCCGCTTTCTCTGTATCTTCGGGCTTTATGCCGGGAAGGAAGGATTGTTGAAATGCTTGAGGCTTTAGAAGCCATGGCCAAAG ATAACCAGACAATCCCTCCAAGGGCAATGCTTTTGAGCAGAAAATACCGAACATTAGTGAGCTCATGGATTGAACCTTTACAAGAGGAGGCTGAACTTGG CTATGAGATTGATTACATTGCTAGGTAATAGGTATTGTTTCCTTTTCAACAACAGTTGCTATTTTGTATTTCATTATTTATTGTTTATTCTATTTATGTT TGCATATATGCTGATAATTTATCTTTGGTTAGGGAACCAAGTCCTAGATTGAAATTATTAAAATGGTTTGATTTGTTTGTGTATATTATATATAGTTTTT TTGCTGCACAAGAATTGTGTGCATAACAATACATGATATATTGCCTCTTGTAGTATGTTTCTATGGCTTTTATGTTTGCATGCAGCTCAATCTGTCCACC AGAGGTAACTTTAATTTCTGAAATCTCTGTAGTACTCAACACATGAAAATAGGCAAACCAAAATATAAATAGTGGGTCTTAAACTCTTGTTATTTCCTAG TATGAAAATTTGCCTGCTTATTTTTAGTTTCCTTTCATTCTATTTTAGTGCAGGCATGTGCTAGCAATGATGTAGTATGTATTAGCTAATGGGTTTCATG TTAAGTTGTTGATTCTTTTTTAAATGAATCAGGCATGTGCCAAGGATGACTTAATATATACAACAACAAAAGCCTTTTCCCACTAGGAGGATCAGCTACA TCCTACATGGATTAAACAATGCCACTTTGTTTTATCAAAAACCAAATATTCTGATAGGTCATTTAGGTCTAAGTCCTTTCTAACAGTTTTCTTTAGTACA ATTATTCTTAATGTAATCTTATATGCTCACTCATCCAACACAATATTTTCATCTTTGCCTCACCTATCTTATGCTTTTGTTGGCAATTTATTTAATACAT TTTATTATATTGATTCTTTTTATTAATGTGTTTATTCCTATTAATTGAAACAGATATGTCGCAGAGGGTGGCCTTACCGGAGAGCGCAAGCGGTGGGTGC CTAGAAGAGGTAAAACACCTCTAGATCCTGATGCAGATGGATTTATATACTCAAACCCAATGGAGACTTCCTTCAAACAAAGATGTCTCGAGGAGTTGAA GTTGCACCATAGAAAGCTTTTGAAGAACTTGCAGAATGAAGGACTTGCTGCTTTAGGGGATGGTGCATCTGAATCTGATTATATTAGAGTGCGGGAGAGG CTAAAAAAATTCATAAAGGGGCCTGAGCAGAATGCCTTAAAGCCCAAGGCTGCTAGTAAAATGCTTGTTTCTGAATTGAAGGAAGAACTAGAAGCACAAG GTTTACCTACTGATGGGACTAGAAATGTTCTTTACCAGCGTGTACAGAAAGCAAGGAGAATAAATCGATCTCGTGGTCGGCCCCTTTGGGTTCCACCAGT GGAAGAGGAGGAGGAAGAGGTGGATGAAGAAGTGGATGCATTAATTTCGCGTATAAAGCTGCAGGAAGGAAATACAGAGTTCTGGAAGCGTCGCTTTTTA GGAGAAGACATAACTAGCAATAATGGAAAGTCATTGGATGTTGGTAAATCAGAGTCCGATGAAGTTTCAGATGATGTCGATGCTGTGGAAGATGCTGCAA AAGGGGTTGAGGATGATGAGGCAGACGATGATGAGGACGATGAGGAAGTAGAACAGGTAGAAGAGGAAGTAGAACCGGTAGACAACCAAGATGTAGACAG GGTAAAGCAGAAGGAAGTTGAAGCTAAAAAGCCCCTTCAAATGATTGGAGTTCAGTTGTTAAAAGATTCTAACCAACCCACCTCATCCAAAAAGTACAAA AAAACTTCTCGTCGATTGCTTGTTGAGGATGATGCTGATGATGATTGGTTTCCTGATGACATATTTGAGGCATTCAAGGAACTGAGGAAGCGGAAAGTAT TTGATGTATCAGATATGTATACCATAGCAGATGCTTGGGGATGGACGTGGGAGAGAGAACTGAAGAATAAACCTCCTCGTAGATGGTCACAGGAATGGGA AGTAGAGTTGGCAATCAAAGTTATGCAGAAGGTCATAGAATTGGGAGGGACACCCACTATAGGAGATTGTGCCATAATCATACGTGCAGCTATAAGGGCG CCTTTACCTTCAGCTTTCTTGACAATTTTGCAGATAACTCATGGTCTTGGTTATAAGTTTGGGAGACCCCTTTATGATGAGATCATTTCTCTATGCCTTG ATCTTGGGGAACTAGATGCTGCTGTTGCAGTAGTTGCAGACTTGGAGACAACAGGGATCTTGGTTTCAGACGAGACCTTAGATAGGGTAATTTCAGCAAA ACATAGGATTAACAATACCTCCAACGATAACATTATAGATGTATGATTGTAAACTTTTACCTTCAAGTTGTGTGAGTAAAACTTGCATGGGCACATGAGC ATAACTATTCCAAATCTTAAGGTAACTTTAGAATAATTATAGTAAATGCATTGTTGTTATTTAAGATTATTACTTTTAATGTTGGTTCCTCCTTTTAGGC ATTGTACCCATACACGATTTAGGCATGTTGTACTTTATTGCAAAGGAAAAGATAACGCATGTTGTTTAGTATCATCAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_151300; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_383798
| Blastp | - |
|---|---|
| Blastx | Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial from Arabidopsis with 24.52% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0000541) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452207.1) |
| Pfam | SAP domain (PF02037.26) |
| Rfam | - |
| GO | - |