| Id Trinity | TRINITY_DN47289_c1_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_385051 |
| Sequence | ATATCGTGGTGGTTCATAAGCAACGAAAGAGGGTTGAGGTCCCTAAACCCTGAGAGGTTAGCAATAGAGTGAAGAGACAATGAGAATCTCGTTGGACGAT TCAAACTACTCAGACCCAACTCACTCTCCTCTCACTCCTAACACTGACCAACTCCAATGGCTCCCTCTTCCCCAACACCCTCTCTTCACCTCCACCACAC TCCCCACCGCCTCCTCCGCCACCAAAAACCTCTTCGCCTGGGACGGCGCCTCCCGTCTCTATTTCTGGGATTCCGTCAATACCTGCCTCCACCGCCTCTC TCTCCGCCTCGGCGACCCCGATCCTACTTCCGTCCTCGCCGCTTCTCCCTCTAAGGTATTGCAAATTGATACGGAGCTCAACTTCGATGTTCAGAAAATC TCTATTAACAGAAACGGAACTGCTATGCTTCTTTTCGGATCTGAACGGCTCTGCGTAATGTATCTATATGGACGCGCTTCCAAAACCGACGTCAATTTGA TTTGCAGGACTATAACTGTTGGTTCAAATGCTTATTCCAACGGAAGCAATGATATTCGTGTCTTACAAGCGCTATGGCACCCCTCTAGTGATACTCATTT GGGAATCCTTTCCTCCGACTCTGTTTTCCGGCTTTTCAATCTGGCTGTGGATCCTTTGCAACCAGAGCAAGAGTATTATTTACAGCCCGTGGAGTCAGGT AGATCCAGGAATGCCTCGTCAGTGTGCCCAGTTGATTTTTCTTTTGGGGATAACCACTTATGGGACAAGTTTAGTGTTTTTATTTTGTTCAGCGATGGGG CTATCTATGTACTTTGCCCAGTTGTTCCATTTGGAAGTCTCTTCAAATACGAGTCTCTATTGGAAATATACAATGATGCTCAGACATTTGGGCTAAAATC AACCAACTCTGTAGCAGCTAGTAATTCAAAATTGGCAATCTCTTGGTTAGAAGCAACATTTCCTGAGTTAAAGAATGTAGAAACTCAAGGAGACAGCCTG TCTTTGTTCAGAGCTCATGCTTATGCTTTATTCGATTCATCTCTTGTCTTGCAGGGACCTCTGCGAAGAGTAGGTCAAGGTGGAAGTGAAGATTCAGTTG GCCGTAGTGCAGAATGTGAAGGTCGTGCAATTAGTTTTCTCTACAATTTAGTCAGCAAAGACTCTATTTTGGTGACTGCCTGGAGTGGTGGGCAATTACA GATTGATGCTCTAGCAGATGAGATCCAACCTCTCTGGAGTGTTGGTAGCCCCCCTCGTCTTCGTGTTGATTATCTTGACCAAATTCTTGGTCTTGCTATG ATTTGTGAGTCAATTTCCAGCAGCTCTCTGGAGGATCTTGATCATAATGCTTGGTTGGGTAATCCACCCCCGCTTTTGAGACTGGCTATTGTTGATTTGG CTTTGCCACGACGAGCAGAAAGTGGTTATAATATTTCATTATTTATTGATAACCTTATGCCAGAAAGAATATATTCCCTTCATGATGGAGGGATTGATTC AATAGTGTTGCATTTTCTTCCATTTACAAGTCAGACAAATGGCAAGGATGATACACTGAGACCACCTTCTGTGCATCCTGTTCTAAATACATGCCAGAGT GGATCCACCTCAGAGCCTTCACTTTGTGGTTTTGTCTCATTGTCAGATTCATTTGGATATTCGTGGATTTTGGCTGTTACTCTTTCTCAAGAGTGTGTTG TGCTTGAGATGAAAACTTGGAACCTCTTGCTTCCAGTGAGTATTGATATGGAAAAGAAACCCATTCAATCAGAAGGTGAATCAAAAGAGAGAGAAATGTC AACTATAATTAGCAAAGAACTACTTAGTGGCCCAAAGGAGGTACTTATTCCTCAGGCTCCAAGTTTGCGTTCTGTTGCAGCTGATTCAATTGAAGGCCGA TCAACATTACACCAGTATTTCAAGTTATTTCATGAAACTTACGTAGAGTATGCACATAAGGTATGCCCCAGCCTTTTAATGCTTAGTTACCCCTGTTTCT TTCATTCCTTATTTTGACCTTGCATATTTATCTCATTTACTAAGACTGGGACTCGAGCTGCTATCCTATTTTATTTGTTATGGGCTTGTAGCATTGCTAT TCTATTTTTTCCTTTTTCAATGAGTGTTCTCTAATCAGATTTAATCCAAACTGAAGGGGCCAAGAGTCATTAATACCACAGAAGGTCTAATGTAGTTAAT TGACCATAAATTCCTTCACATTAAGGAAAATGTTTTTGGTGATCACTTGTGGAATATCTTTACATTAGAAGGTTTCTTTAGAATATTTTAGAGCTTGATG TATTGTAAACAAATTATGTAAAGTGTAATCCAAATGGGATATTACAAGCGCACATAATTTGAATAAGCTATGCTTTTAGAGATCAATACTTTGTCACTGA ACATGATATATGATAGAGCATTATGGCGTTGTTCGATCCATGTAGCTGACCCGACCAAGGAGGATAAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_151428; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_385051
| Blastp | Nuclear pore complex protein NUP88 from Arabidopsis with 58.79% of identity |
|---|---|
| Blastx | Nuclear pore complex protein NUP88 from Arabidopsis with 61.84% of identity |
| Eggnog | Nucleoporin 88kDa(ENOG410YC30) |
| Kegg | Link to kegg annotations (AT5G05680) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439391.1) |
| Pfam | Nuclear pore component (PF10168.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |