Ll_transcript_385052

• Id Trinity: TRINITY_DN47289_c1_g1_i2
• Name Transcript: Ll_transcript_385052
• Sequence: ATATCGTGGTGGTTCATAAGCAACGAAAGAGGGTTGAGGTCCCTAAACCCTGAGAGGTTAGCAATAGAGTGAAGAGACAATGAGAATCTCGTTGGACGAT TCAAACTACTCAGACCCAACTCACTCTCCTCTCACTCCTAACACTGACCAACTCCAATGGCTCCCTCTTCCCCAACACCCTCTCTTCACCTCCACCACAC TCCCCACCGCCTCCTCCGCCACCAAAAACCTCTTCGCCTGGGACGGCGCCTCCCGTCTCTATTTCTGGGATTCCGTCAATACCTGCCTCCACCGCCTCTC TCTCCGCCTCGGCGACCCCGATCCTACTTCCGTCCTCGCCGCTTCTCCCTCTAAGGTATTGCAAATTGATACGGAGCTCAACTTCGATGTTCAGAAAATC TCTATTAACAGAAACGGAACTGCTATGCTTCTTTTCGGATCTGAACGGCTCTGCGTAATGTATCTATATGGACGCGCTTCCAAAACCGACGTCAATTTGA TTTGCAGGACTATAACTGTTGGTTCAAATGCTTATTCCAACGGAAGCAATGATATTCGTGTCTTACAAGCGCTATGGCACCCCTCTAGTGATACTCATTT GGGAATCCTTTCCTCCGACTCTGTTTTCCGGCTTTTCAATCTGGCTGTGGATCCTTTGCAACCAGAGCAAGAGTATTATTTACAGCCCGTGGAGTCAGGT AGATCCAGGAATGCCTCGTCAGTGTGCCCAGTTGATTTTTCTTTTGGGGATAACCACTTATGGGACAAGTTTAGTGTTTTTATTTTGTTCAGCGATGGGG CTATCTATGTACTTTGCCCAGTTGTTCCATTTGGAAGTCTCTTCAAATACGAGTCTCTATTGGAAATATACAATGATGCTCAGACATTTGGGCTAAAATC AACCAACTCTGTAGCAGCTAGTAATTCAAAATTGGCAATCTCTTGGTTAGAAGCAACATTTCCTGAGTTAAAGAATGTAGAAACTCAAGGAGACAGCCTG TCTTTGTTCAGAGCTCATGCTTATGCTTTATTCGATTCATCTCTTGTCTTGCAGGGACCTCTGCGAAGAGTAGGTCAAGGTGGAAGTGAAGATTCAGTTG GCCGTAGTGCAGAATGTGAAGGTCGTGCAATTAGTTTTCTCTACAATTTAGTCAGCAAAGACTCTATTTTGGTGACTGCCTGGAGTGGTGGGCAATTACA GATTGATGCTCTAGCAGATGAGATCCAACCTCTCTGGAGTGTTGGTAGCCCCCCTCGTCTTCGTGTTGATTATCTTGACCAAATTCTTGGTCTTGCTATG ATTTGTGAGTCAATTTCCAGCAGCTCTCTGGAGGATCTTGATCATAATGCTTGGTTGGGTAATCCACCCCCGCTTTTGAGACTGGCTATTGTTGATTTGG CTTTGCCACGACGAGCAGAAAGTGGTTATAATATTTCATTATTTATTGATAACCTTATGCCAGAAAGAATATATTCCCTTCATGATGGAGGGATTGATTC AATAGTGTTGCATTTTCTTCCATTTACAAGTCAGACAAATGGCAAGGATGATACACTGAGACCACCTTCTGTGCATCCTGTTCTAAATACATGCCAGAGT GGATCCACCTCAGAGCCTTCACTTTGTGGTTTTGTCTCATTGTCAGATTCATTTGGATATTCGTGGATTTTGGCTGTTACTCTTTCTCAAGAGTGTGTTG TGCTTGAGATGAAAACTTGGAACCTCTTGCTTCCAGTGAGTATTGATATGGAAAAGAAACCCATTCAATCAGAAGGTGAATCAAAAGAGAGAGAAATGTC AACTATAATTAGCAAAGAACTACTTAGTGGCCCAAAGGAGGTACTTATTCCTCAGGCTCCAAGTTTGCGTTCTGTTGCAGCTGATTCAATTGAAGGCCGA TCAACATTACACCAGTATTTCAAGTTATTTCATGAAACTTACGTAGAGTATGCACATAAGGTGTACCTGGAGCTCAAGCATCATGCACCCCAGTTGACGA AAATCATTAATGACCAACATTCTCGTTTAGGCGGTGCACAGCAAAAGCTTTTGAAAGTTGAGGAGAAAGAGTCTATATTACAGAAAAGGATAGATCATGC AATTGAAATGCACAATTCTTTGGAAGAGCGATTGCAACAATTAAGGAACTTACCTTGTGCTCACAAAAAACCACTGTCAAAAGCAGAGCGACAATACAAG TCTGAGCTTGACCACTTCAAGGAAGTTGAGTTGGATGCTCTGCATTCTTCTGTTGACGCGCTAAGTGCAAGGCTGAGAAGGCACATTCAAGCATCAAAAG CTAGTCACCAACAACAAAAAGTACCAGGCAAGAAAATTTGTGCTGCAGATAATCAGATATCCTTGCTCAAGTCATCACTTGAAAAGCTTTCACTTTTAAA TAGTGAAAATACAAAAAAAGTTAAGCTTGTAGAGTCTTCATTGAAAAACAAAGAAGTAAGCATCAGAGAATCAAGCTTGCCTACAGTTTAAAACTTTCCT AGAGTATTTAATTTTTGTAGCAGGGCAGTGATGGCTTTGAATTAAGCTCCTACTGTTTGCACTCCCACAAATTTAGTCATCTCAATATGTCCCACACTAA TTTTTTGGGATTTCATAAATGAAGATGCAACTTTATGTGCCAGTGACTAAAAGGAAAACGATGGAATGTTTGTATGTTGTACCTGAGTCCCTTTTCAATA TGGCAAGTATCGTAGAAGAAATATCAGGTATTTATTCTATTTTTTTATAGGGATTGTACTGCAAATGGGTGAAATGGTCAACAATAACCTCAACTCTACC GTGTAGATACTATTTTCAAGATTTAAACTCGTGTTATGGTGGTCATTAAACATTAACCTTTATGTCAAG
• Tissue: pods
• Gene name: LI_gene_151428;
• Additional information: details;

Expression of Ll_transcript_385052

FPKM

• PAB: 0.7
• PNAB: 6.9
• PS1: 8.6
• PS2: 7.9
• PS3: 9.5
• PW1: 6.1
• PW2: 6.1
• PW3: 6.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_385052

• Blastp: Nuclear pore complex protein NUP88 from Arabidopsis with 57.49% of identity
• Blastx: Nuclear pore complex protein NUP88 from Arabidopsis with 59.76% of identity
• Eggnog: Nucleoporin 88kDa(ENOG410YC30)
• Kegg: Link to kegg annotations (AT5G05680)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439391.1)
• Pfam: Nuclear pore component (PF10168.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;