Ll_transcript_501612

• Id Trinity: TRINITY_DN47310_c0_g1_i1
• Name Transcript: Ll_transcript_501612
• Sequence: CGTTACAAAACAAAGAGAGGGTTTTGAGAATCAGTAACATTGAGAGCGTGTGACAATGGCGGAAGAGAAAAGTGAGTTGAGGATTTACAATTCCATGACT AATGAGAAAGAGATCTTCAAACCCAAACAACCTGGCAAGGTTTCAATGTATGTTTGTGGTGTCACTGCTTACGATTATAGCCACCTTGGTCACGCTCGTG CCGCCGTTTCTTTCGATATCTTCTTCAGGTACCTTAAACACTTAGGGTATGAGGTAACATATGTGCGGAATTTCACCGATGTTGATGACAAGATAATTAA GCGGGCAAATGAGACCGGTGAAGATCCTTTGAACTTGAGCAACCGTTTTTGCGATGAATATGATCTTGATATGACTTATCTTCAGTGTGAGAGCCCGTCT CGGGTGCCTCGTGTTTCTACGCACATTGGCGAGATAAAGGACATGATAACTCAGATCATCAACAATGGCCATGCTTATGAAGTTGATGGTGATGTTTTCT ATGCTGTTGAAAAATTCCCAAATTATGGCATGCTGTCTGGACAAAGGCTAGAACATAATAGAGCTGGGGAACGAGTTGCTGTTGACTCAAGAAAGCGTCA CCCTGCTGATTTTGCATTGTGGAAGGCTGCTAAGCCTGGTGAGCCTTCTTGGGACAGTCCTTGGGGTCCTGGAAGACCAGGGTGGCACATTGAATGCAGT GCAATGAGTGCTTGTTATTTAACTCATAAATTTGATATTCATGGTGGTGGAATTGATCTGATCTTTCCACATCATGAAAATGAGATTGCCCAGAGCTGGG CTGTGGACAACGAGAGCAATGTCAGTTATTGGTTGCATAACGGGCACGTCACTAATAATAATGAGAAGATGTCAAAGTCCTTGGGCAACTTTTTCACTAT TCGTCAGATTATTGAGCGTTATCATCCGCTTGCATTGAGACACTTTTTGATCAGTGCCCATTACAGATCTCCATTAAATTATTCAGTGGCACAGCTGGAG AGTTCATCTGATGCTGTTTATTATATATTTCAGACTCTTCAAGATTGCAAAGATACTTTATCATCACTTCAACAAGAGGGCACCGATGAAAAGAAAAATG TTCCTCAAGCTGAAGAGGCAGCCAAGGAATGCATTAAGAAGCTGCGTATCGAGTTTCAAACCAAAATGTCAGATGATTTTCAAACACCAGTAATAATAAC TGGTTCTCTCCAAGAGGCCTTGAAATATATCAACACTTCTTTGAAGAAGCTGAAGAAAAAGATGCAGAAAAGGGCACAGTTACAATTGATTCAATCACTA ATTCAAGTTGAGAAAGAAATTGGAGAAGTTCTCGACTTACTAGGATTTTTGTCCTCCAAATCCTATGCCAAGATTCAATCACAAATCGAAATTGAGAAAG ATATCGCGAAAGTTCTGGGCTCACTAGGATCAATTCCAACTAATTCCTATGCCGAGGTTCTGCAGGAGTTGAAAGACAAGGCATTGAAGAGAGCAGATTT GGCAGAAGATGAAGTACTAAGTCTGATAGAAGAAAGAACTCAAGCAAGGCTTAATAAGGATTTTCCTAAGAGTGATAAGATTAGGACTGATTTAACTGCT AAAGGCATTGCACTAATGGATGTTGGAAATGAAACAATTTGGAGACCATGCATCCCAAGTGAACCACTTGCAGCAGAAGTTACACAGAAGGCACCTATAG TTGAAGAAAAACAATCAACACCAACAGTGGATAAAAAAGTGGAGCAAGAAAGGAATGTGCCACAAACTGCATCAACATGAGGGTTGATCAATGTCACTCC ACATAGCTATGATTTATATAGAACTGTTTAATAATTTATCAATGTTGTGACATGAGGAAGCTTCATTTGTATAACAGGTGCATGCTAAGACAAAGTGCCT TGGTGTTTAGGACTTGGAATCATTTTACAATTTTACTCATTTTTGGGGTGCTATATATGTTTGGCCTGTTAAACATGTCAACTCAATCATGTCTCTACCT GGATTACGGTGATTGAGAAGTGATAGTAAAAATAAAAATAACTTATAAATGATGATGGGTGATGTACAAATTTTGGATGATGGTTAGAAGTGATAATAAA TTAGTGCTTGTGTTGAACAATTGTTTCGATGTAGTATTGGCACTCGTATTCGAGTTCATCGGAGGAAGTTGTTGAATCCGATGCTGCATCGGCTTTAGGT GCACATTGGGGAAGTGAGGATCAATTGAGAGTGTGAACTGGTTATTTTTTGAAGAATCCAGGGCTGTGAAAGGTTTCAGAGTATGTGTTTATTTATAATA AGAGTTGTAGGTTATTGCATGTTATTTAGATTATGCGATTATTACACATGCAAATTGAATATCCTCAAAAGTTGAGAAAGCAAC
• Tissue: pods
• Gene name: LI_gene_151610;
• Additional information: details;

Expression of Ll_transcript_501612

FPKM

• PAB: 0.7
• PNAB: 18.8
• PS1: 22.6
• PS2: 19
• PS3: 22.9
• PW1: 12.6
• PW2: 9.5
• PW3: 7.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_501612

• Blastp: Cysteine--tRNA ligase 2, cytoplasmic from Arabidopsis with 60.63% of identity
• Blastx: Cysteine--tRNA ligase 2, cytoplasmic from Arabidopsis with 60.45% of identity
• Eggnog: Cysteinyl-tRNA synthetase(COG0215)
• Kegg: Link to kegg annotations (AT5G38830)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453015.1)
• Pfam: tRNA synthetases class I (C) catalytic domain (PF01406.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;