| Id Trinity | TRINITY_DN47310_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_501614 |
| Sequence | GTGCTAAAATCTTTACCGGTTATTTAAAAAAATTAGTAACATTTTGAAATCTCTCTCATTTCTTGATGATTGCAGGCTGCTAAGCCTGGTGAGCCTTCTT GGGACAGTCCTTGGGGTCCTGGAAGACCAGGGTGGCACATTGAATGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATATTCATGGTGGTGG AATTGATCTGATCTTTCCACATCATGAAAATGAGATTGCCCAGAGCTGGGCTGTGGACAACGAGAGCAATGTCAGTTATTGGTTGCATAACGGGCACGTC ACTAATAATAATGAGAAGATGTCAAAGTCCTTGGGCAACTTTTTCACTATTCGTCAGATTATTGAGCGTTATCATCCGCTTGCATTGAGACACTTTTTGA TCAGTGCCCATTACAGATCTCCATTAAATTATTCAGTGGCACAGCTGGAGAGTTCATCTGATGCTGTTTATTATATATTTCAGACTCTTCAAGATTGCAA AGATACTTTATCATCACTTCAACAAGAGGGCACCGATGAAAAGAAAAATGTTCCTCAAGCTGAAGAGGCAGCCAAGGAATGCATTAAGAAGCTGCGTATC GAGTTTCAAACCAAAATGTCAGATGATTTTCAAACACCAGTAATAATAACTGGTTCTCTCCAAGAGGCCTTGAAATATATCAACACTTCTTTGAAGAAGC TGAAGAAAAAGATGCAGAAAAGGGCACAGTTACAATTGATTCAATCACTAATTCAAGTTGAGAAAGAAATTGGAGAAGTTCTCGACTTACTAGGATTTTT GTCCTCCAAATCCTATGCCAAGATTCAATCACAAATCGAAATTGAGAAAGATATCGCGAAAGTTCTGGGCTCACTAGGATCAATTCCAACTAATTCCTAT GCCGAGGTTCTGCAGGAGTTGAAAGACAAGGCATTGAAGAGAGCAGATTTGGCAGAAGATGAAGTACTAAGTCTGATAGAAGAAAGAACTCAAGCAAGGC TTAATAAGGATTTTCCTAAGAGTGATAAGATTAGGACTGATTTAACTGCTAAAGGCATTGCACTAATGGATGTTGGAAATGAAACAATTTGGAGACCATG CATCCCAAGTGAACCACTTGCAGCAGAAGTTACACAGAAGGCACCTATAGTTGAAGAAAAACAATCAACACCAACAGTGGATAAAAAAGTGGAGCAAGAA AGGAATGTGCCACAAACTGCATCAACATGAGGGTTGATCAATGTCACTCCACATAGCTATGATTTATATAGAACTGTTTAATAATTTATCAATGTTGTGA CATGAGGAAGCTTCATTTGTATAACAGGTGCATGCTAAGACAAAGTGCCTTGGTGTTTAGGACTTGGAATCATTTTACAATTTTACTCATTTTTGGGGTG CTATATATGTTTGGCCTGTTAAACATGTCAACTCAATCATGTCTCTACCTGGATTACGGTGATTGAGAAGTGATAGTAAAAATAAAAATAACTTATAAAT GATGATGGGTGATGTACAAATTTTGGATGATGGTTAGAAGTGATAATAAATTAGTGCTTGTGTTGAACAATTGTTTCGATGTAGTATTGGCACTCGTATT CGAGTTCATCGGAGGAAGTTGTTGAATCCGATGCTGCATCGGCTTTAGGTGCACATTGGGGAAGTGAGGATCAATTGAGAGTGTGAACTGGTTATTTTTT GAAGAATCCAGGGCTGTGAAAGGTTTCAGAGTATGTGTTTATTTATAATAAGAGTTGTAGGTTATTGCATGTTATTTAGATTATGCGATTATTACACATG CAAATTGAATATCCTCAAAAGTTGAGAAAGCAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_151610; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_501614
| Blastp | Cysteine--tRNA ligase 2, cytoplasmic from Arabidopsis with 53.75% of identity |
|---|---|
| Blastx | Cysteine--tRNA ligase 2, cytoplasmic from Arabidopsis with 56.2% of identity |
| Eggnog | Cysteinyl-tRNA synthetase(COG0215) |
| Kegg | Link to kegg annotations (AT5G38830) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453015.1) |
| Pfam | tRNA synthetases class I (C) catalytic domain (PF01406.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |